Cases11 cases

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1. IL-0082 Losing one CoreDNS pod during a planned EKS node reroll overloaded the remaining CoreDNS pods, causing DNS timeouts and errors across multiple services at RebelMouse

   RebelMouse2025

   Symptoms

   At 13:42 UTC on 19 May 2025, RebelMouse's monitoring tools reported a higher error rate and degraded performance across services. A routine reroll of the EKS nodes had started 27 minutes earlier, at 13:15 UTC.

   DNS resolution failuresHigh latencyHigh error rateService outage

   Trigger

   At 13:15 UTC RebelMouse started its regular reroll of EKS nodes to apply security patches. The planned, automatic termination of an EC2 instance terminated one of the CoreDNS pods.

   Root cause

   Capacity exhaustion

   Component

   CoreDNSNode pool

   Contributing factor

   Change during peak hours

   Detection

   Monitoring tools detected an increased error rate and degraded service performance at 13:42 UTC, and the tech team started investigating at 13:44 UTC.

   Remediation

   • rescheduled the affected CoreDNS pod onto a new EC2 instance
   • scaled up the CoreDNS deployment to more replicas so DNS load was spread evenly across all pods

   Action items

   • Add scale-in protection so CoreDNS pods are not terminated unexpectedly during peak load
   • Review the CoreDNS configuration so that vertical scaling of the pods works
   • Hold regular capacity reviews so the CoreDNS deployment is provisioned for peak load

   View case
2. IL-0099 User servers on 2i2c's Earthscope hub took over 15 minutes to start and kernels were killed during a workshop, because a profile option guaranteed 8 GB of memory with no limit on 32 GB nodes

   2i2c2025

   Symptoms

   On 12 May 2025 at 20:15 EEST a Freshdesk ticket reported that users' servers on the Earthscope hub were taking more than 15 minutes to start and that their kernels were being killed. It happened during a workshop and also affected other instructors using the hub; a second report said a short course of about 30 users was having major problems.

   Pod eviction

   Trigger

   A workshop with about 30 users on a profile option that guaranteed 8 GB of memory and set no memory limit on 32 GB nodes.

   Root cause

   Capacity exhaustion

   Component

   Container memory limitNode pool

   Contributing factor

   No resource requests or limits

   Detection

   A Freshdesk support ticket from the community at 20:15 EEST, brought to the team's attention in the #support-freshdesk Slack channel at 20:49.

   Remediation

   • ran a helm rollout and hub redeploy, which partly improved server starts
   • made the 'medium' profile available and raised its memory guarantee to reduce overcommitment
   • pre-warmed the cluster with 15 nodes for the 30-user workshop
   • set explicit memory limits, with the guarantee equal to the limit, on the community's small-node profile options (https://github.com/2i2c-org/infrastructure/pull/6047)

   Action items

   • Write an incident report
   • Hold an internal retrospective about the incident (https://github.com/2i2c-org/meta/issues/2194)

   Lessons

   A memory guarantee without a limit lets a user server grow into memory that other pods on the same node were counting on, and on a shared node that ends with users' pods evicting each other. Setting the guarantee equal to the limit removes the overcommitment. For a known workshop, pre-warming enough nodes ahead of time keeps server start times short.

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3. IL-0027 All CoreDNS pods landed on one node, the node ran out of memory, and DNS for the whole service went down

   Backpackr2025

   Symptoms

   Services on the production Amazon EKS cluster behind the idus marketplace threw intermittent errors whose cause was hard to pin down. Calls to external services such as RDS and Redis failed now and then, and whenever DNS traffic spiked, domain lookups answered slowly or failed outright.

   DNS resolution failuresIntermittent connection failuresHigh latencyOOMKilledService outage

   Trigger

   All CoreDNS pods were scheduled onto the same node, and that node's memory usage spiked until it ran out of memory.

   Root cause

   Capacity exhaustion

   Component

   CoreDNSClient-side DNS resolver and cachekubeletContainer memory limitNode pool

   Contributing factor

   Unreviewed defaultsSingle point of failureNo caching

   Detection

   The write-up does not say how the full outage was noticed. The earlier DNS trouble showed up as intermittent service errors, and investigating failed calls to RDS and Redis led to DNS resolution failures.

   Remediation

   • deployed NodeLocal DNSCache as a DaemonSet in front of CoreDNS
   • added a PodDisruptionBudget (maxUnavailable 1) and topologySpreadConstraints across zones for CoreDNS
   • lowered ndots from 5 to 2 with dnsConfig in the Deployments

   Lessons

   The CoreDNS setup that EKS creates by default (two pods) can be enough for a small or development cluster but becomes a bottleneck in a large production cluster, and DNS is a single point of failure that needs high availability and room to scale. Tuning the CoreDNS cache and buffer size only relieved the symptoms; the real load came from the extra queries that ndots:5 generates for external names. A CoreDNS pod without a memory limit can share a node's fate with everything else on it.

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4. IL-0016 Prometheus on the live cluster ran out of memory and was OOMKilled, and the monitoring node it ran on went NotReady

   UK Ministry of Justice2023

   Symptoms

   At 14:05 on 25 July 2023, a high-priority PagerDuty alert from Pingdom reported that the "Prometheus - live healthcheck" was DOWN. Prometheus on the live cluster was unavailable, and the Cloud Platform lost its monitoring for a while.

   Monitoring outageOOMKilledNode NotReady

   Trigger

   The growing number of namespaces and Prometheus rules raised Prometheus' memory needs beyond what its node instance size could hold.

   Root cause

   Capacity exhaustion

   Component

   PrometheusNode poolContainer memory limit

   Contributing factor

   No alert on limit

   Detection

   A Pingdom health check on Prometheus failed and raised a high-priority PagerDuty alert.

   Remediation

   • drained the monitoring node, moving Prometheus to another monitoring node
   • changed the node instance size to r6i.4xlarge
   • raised the Prometheus memory limit to 100Gi
   • set the Prometheus container limits to 12 CPU cores and 110Gi of memory

   Action items

   • Add an alert on node memory usage and on a pod using up most of a node's memory (issue #4538)

   View case
5. IL-0070 Critical pods on core nodes evicted when Prometheus began scraping about 200 nodes after a dask-gateway scale-up

   2i2c2023

   Symptoms

   The hub pod of the prod JupyterHub on the leap cluster (leap.2i2c.org) restarted unexpectedly during a large node scale-up, and a user opened a support ticket. The ingress-nginx and proxy pods kept running.

   Pod evictionPods Pending

   Trigger

   A user's dask-gateway workload added about 100 dask-worker nodes within a minute, and Prometheus started scraping the metrics exporters on about 200 nodes.

   Root cause

   Capacity exhaustion

   Component

   PrometheusNode pool

   Contributing factor

   No headroomExcessive blast radiusMonitoring blind spot

   Detection

   A user support ticket (2i2c Freshdesk ticket 414) about the leap hub; the engineer then looked at Grafana and the cluster's nodes and events.

   Action items

   • Configure CPU and memory requests for the hub and proxy pods (#2127; at least 100m CPU was proposed)
   • Make the Grafana OOMKiller dashboard work (#2213)
   • Move LEAP cloud infrastructure to shared nodes (#2209)
   • Update resource requests and limits, mainly for ingress-nginx and Prometheus (#2324)
   • Decide whether Prometheus should scrape dask worker pods (#2366)

   Lessons

   Prometheus load grows with the number of nodes, so a burst of autoscaled nodes can push a nearly full core node over the edge and evict the pods that matter most. Core pods that request 10m of CPU get a tenth of the CPU share of busy neighbours that request 100m. Kubernetes events expire after an hour, so evidence of OOM kills needs a dashboard that keeps it.

   View case

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