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1. IL-0058 Argo CD deleted namespaces shared by several applications, leaving about 97 applications stuck Missing and OutOfSync

   Argo CD users2026

   Symptoms

   After a rolling restart of the Argo CD application-controller, namespaces that several applications shared went into the Terminating state. About 97 applications were then stuck in a Missing/OutOfSync deadlock.

   Resources deleted

   Trigger

   A manual bulk sync with force: true from the Argo CD UI, run during the window after an application-controller restart, on an application whose manifests declared a namespace whose app.kubernetes.io/instance label pointed to a different application.

   Root cause

   Software defect

   Component

   Argo CD

   Contributing factor

   No safeguard on destructive changeUnverified assumptionHarmful manual action

   Action items

   • Refile the problem as #29739: a manual force sync hard-replaces shared cluster-scoped resources through a tracking-ID conflict, ignoring Prune=false

   Lessons

   The sync option Prune=false only protects the prune path; it does not stop a force sync from deleting and recreating a resource. When two Argo CD applications declare the same namespace or other cluster-scoped resource, force-syncing the application that does not own the tracking label can delete it at any time.

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