Cases2 cases

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1. IL-0095 An engineer deleted the prod namespace of the LEAP JupyterHub while believing the kubeconfig pointed at a new cluster, and the hub was down for about an hour

   2i2c2025

   Symptoms

   At 5:00 PM BST on 12 August 2025 a 2i2c engineer declared an incident. While deploying a new cluster called temple and running into NFS issues, the engineer had deleted the prod namespace; the deletion hung, and listing the pods showed many users from a different cluster. The engineer's first message suggested that the kubeconfig had somehow been mutated or corrupted and that some other cluster was being torn down.

   Resources deletedService outage

   Trigger

   While working around a bug in the NFS deployment process for a new hub, an engineer ran a delete of the prod namespace with the kubeconfig context pointing at the LEAP cluster.

   Root cause

   Operator error

   Component

   Persistent volumes and stateful setsJobs and CronJobsIngress controllerTerraform

   Contributing factor

   No safeguard on destructive changeNo runbook

   Detection

   The engineer who ran the deletion noticed when it hung and the pod list showed users of another cluster, and declared the incident at 5:00 PM BST, before the uptime check on leap.2i2c.cloud failed at 5:32 PM.

   Remediation

   • deleted the single remaining user pod in prod so the namespace deletion completed
   • killed the nfs-share-creator job that was blocking the deployment
   • redeployed the prod hub with the updated NFS server IP address
   • deleted the prod ingress during the deployment so that users could not start servers mid-deployment

   Action items

   • Write an incident report
   • Write a short incident response document for the case "I deleted prod, what next?"
   • Upgrade jupyterhub-home-nfs and remove the nfs-share-creator job
   • Add opt-in hardening against nested kubeconfig contexts to the deployer system
   • Change the engineer's shell configuration to show distinct kubeconfig contexts more clearly

   Lessons

   Provisioning persistent storage outside Kubernetes with Terraform meant a deleted namespace cost an hour of downtime and no data. The engineer had no visible cue for which kubeconfig context was active, which turned a workaround on a new cluster into a deletion on a production one. The engineer knew the fix but did not feel confident redeploying without first confirming with the tech lead, in another time zone, that there was no risk of losing persistent data, and reaching the tech lead took time.

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2. IL-0232 Calico pods in the codfw WikiKube cluster hit their resource limits and crash-looped, taking nodes out one by one

   Wikimedia Foundation2024

   Symptoms

   At 05:01 UTC on 9 October 2024 a page fired for GatewayBackendErrorsHigh, elevated 5xx errors from page-analytics_cluster in codfw, followed by a growing number of KubernetesCalicoDown alerts for WikiKube nodes not running the calico-node pod and by MediaWikiMemcachedHighErrorRate. For about an hour uncached MediaWiki requests, such as those of logged-in users, edits and API calls, saw high latency or errors.

   High error rateHigh latencyContainer crash loopProbe failuresControl plane lag

   Trigger

   An operator used the new mwscript-k8s utility to run a batch of video transcode maintenance, the TimedMediaHandler requeueTranscodes.php script. mwscript-k8s deploys a whole helm release for every script invocation, so the batch created close to 2k Calico NetworkPolicies along with many other resources over several hours.

   Root cause

   Capacity exhaustion

   Component

   CalicoHelmJobs and CronJobs

   Contributing factor

   Change with a delayed effectNo runbook

   Detection

   Automated monitoring detected the issue and paged the on-call SRE: GatewayBackendErrorsHigh at 05:01:36 UTC, 16 KubernetesCalicoDown alerts at 05:03:32 UTC and MediaWikiMemcachedHighErrorRate at 05:04:15 UTC.

   Remediation

   • Raised the resource limits of the Calico and Typha pods and applied the change with helmfile, which redeployed all Calico pods

   Action items

   • Stop mwscript-k8s from creating so many resources

   Lessons

   The incident came close to a full outage. Automated monitoring caught it and many responders found the cause, but end users were affected and responders were unsure whether they could switch over to eqiad. The problem was noticed just before the hand-off from Americas to EMEA SRE shifts, a period with a long-known lack of coverage, and it helped that the transcodes were not queued on a Friday evening in the US.

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