Cases3 cases

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1. IL-0012 CPU limits and an unpatched kernel CFS quota bug throttled multi-threaded services into stalls, failed health checks and timeouts

   Omio2020

   Symptoms

   For about six months, applications on Omio's Google Kubernetes Engine clusters stalled at random: they got stuck, stopped answering health check requests or lost network connections, and nothing the team looked at explained why.

   CPU throttlingProbe failuresHigh error rateHigh latencyIntermittent timeoutsIntermittent connection failures

   Trigger

   Multi-threaded workloads running with CPU limits on nodes whose kernel did not yet have the fix for a known CFS quota bug that causes unnecessary throttling.

   Root cause

   Software defect

   Component

   Container CPU limitLinux kernelkubelet

   Contributing factor

   Unknown limitMonitoring blind spotUnpatched known bug

   Detection

   Months of random stalls and failed health checks led the team to read the cgroup cpu.stat throttling counters inside the pods, which showed far more throttling than the limits should allow.

   Remediation

   • removed CPU limits until the kernel with the CFS bug fix was deployed across all clusters

   Action items

   • Deploy the kernel with the CFS quota bug fix across all clusters
   • Monitor utilisation, saturation and error metrics, API latency and error rates to confirm the change behaves as expected

   Lessons

   A CPU limit is a time quota per 100 ms period, not a share of cores, so a multi-threaded container can be stopped for most of each period long before it uses the cores it was given, and a kernel bug can make that worse. Throttling is invisible in standard Kubernetes metrics and has to be read from the cgroup counters. Removing limits trades away protection against a container that takes a whole node, which is only acceptable when runtimes are tuned.

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2. IL-0035 Worker nodes went NotReady after a new ElastAlert rule without memory limits used up node memory

   NU.nl2019

   Symptoms

   The NU.nl development team got reports that several services on one of its Kubernetes clusters behaved erratically: occasional error pages, slow responses and timeouts. The affected services were mostly internal tools and dashboards.

   Node NotReadyHigh error rateHigh latencyIntermittent timeoutsMonitoring outageOOMKilled

   Trigger

   A new ElastAlert rule, deployed shortly before from the command line, that fired if the Cloudfront-* Elasticsearch indexes stopped receiving documents; those indexes take a few million requests per hour, and the rule made ElastAlert's memory grow without bound.

   Root cause

   Configuration change

   Component

   Container memory limitkubeletPrometheus

   Contributing factor

   No resource requests or limitsUnreviewed defaultsNo alert on limitMonitoring blind spotExcessive blast radius

   Detection

   Users reported error pages, slow responses and timeouts from several services; no alert fired.

   Remediation

   • terminated the NotReady nodes one by one so the auto-scaling group replaced them (the new nodes also went NotReady, but Prometheus and Grafana landed on a stable node)
   • found the ElastAlert pods' memory growth on the Grafana pod memory dashboard
   • fixed the ElastAlert problem that caused the memory growth

   Action items

   • Define alerts on resource usage such as CPU, memory and disk space
   • Keep researching an alerting strategy that combines Elasticsearch, Prometheus Alertmanager and New Relic
   • Consider exporting metrics out of the cluster and running Grafana outside it, on EC2 or a separate Kubernetes cluster
   • Either visualise the important metrics in the ELK stack or make Prometheus and Grafana more available, and improve the metrics strategy
   • Set resource limits for ElastAlert through the Helm values
   • Configure namespaces with default memory requests and limits
   • Isolate customer-facing workloads from build, logging and monitoring workloads (a dedicated node group, or later a separate tools cluster)
   • Deploy everything through automation such as Jenkins pipelines, and consider a GitOps approach
   • Deploy through a pipeline that includes a smoke test step
   • Make Kubernetes and cloud infrastructure work part of the team's sprints, picked up by all team members while pairing with more experienced members, and hold workshops that go deep into specific topics

   Lessons

   Fixing the root cause covers only a small part of what an incident can teach; the chain of smaller failures around it is where most of the learning is. A pod without a memory limit can take whole nodes down, so limits need defaults at the namespace level. Monitoring that runs inside the cluster it watches goes blind with it. Changes installed by hand from the command line leave the rest of the team without a record of what changed.

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3. IL-0003 linkerd lost Kubernetes service discovery after an etcd reconfiguration, and restarting every linkerd instance turned failed payments into a full platform outage

   Monzo2017

   Symptoms

   At 14:10 an engineer deployed a change to a service that Monzo's current account needs to process payments, and every request to that service started to fail. Current account customers saw payment failures; the prepaid card was not affected at first because it does not use that service. The change was rolled back at 14:12, but the errors continued.

   High error rateStale endpoint routingService outage

   Trigger

   At 14:10 an engineer deployed a change to a service needed to process current account payments. Two weeks earlier the etcd cluster had been upgraded and grown from three to nine nodes, and one day earlier another team had scaled a new service down to zero replicas while leaving its Kubernetes service in place.

   Root cause

   Software defect

   Component

   etcdKubernetes API serverLinkerdkubelet

   Contributing factor

   Ineffective rollbackHarmful manual actionOverlapping failuresMonitoring blind spotSingle point of failure

   Detection

   Payment failures began right after the 14:10 deploy. The team rolled back at 14:12 and declared an outage internally at 14:16. At 15:13, when no service could serve requests, practically all automated alerts fired.

   Remediation

   • Rolled back the payments service change (the errors continued)
   • Activated internal backup processes so most customers could still use their card
   • Restarted all linkerd instances (this made the outage worse)
   • Restarted the three Kubernetes API server processes so replacement linkerd instances could start
   • Began deploying a newer linkerd version with the fix for empty services
   • Deleted the Kubernetes service that had no endpoints, which let linkerd load service discovery again

   Action items

   • Fix the bug in Kubernetes that can trigger timeouts after a cluster reconfiguration
   • Roll out a new version of linkerd that fixes the parsing error
   • Create better health checks, dashboards and alerts for the affected components so they give clearer signals about what is wrong and prevent human error
   • Improve procedures to communicate outages internally and externally as clearly and quickly as possible

   Lessons

   A large failure in a distributed system can be very hard to understand, and well-meant human action can compound it, as restarting every linkerd instance did here by exposing a second incompatibility. Because Monzo deploys often and its network changes constantly, the deployment and request-routing systems have to be trustworthy. Monzo committed to publishing a similar post-mortem for any incident of this severity.

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