Cases2 cases

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1. IL-0020 During an EKS 1.30 upgrade the descheduler tried to reschedule every pod on the cordoned nodes at once and production workloads went down

   UK Ministry of Justice2025

   Symptoms

   At 09:36 on 18 March 2025, during the upgrade of the live cluster to EKS 1.30, users reported that their pods were being terminated and were not restarting automatically, in both production and non-production environments. Automated infrastructure alerts fired as well, and production services had outages.

   Pod evictionPods PendingService outageUpgrade stall

   Trigger

   Upgrading the live EKS cluster from 1.29 to 1.30, during which the descheduler attempted to reschedule all pods on the cordoned nodes simultaneously.

   Root cause

   Faulty deployment

   Component

   DeschedulerNode poolCluster autoscaler

   Contributing factor

   No headroomNo alert on limitUnreviewed defaults

   Detection

   Users reported at 09:36 that pods were being terminated and not restarting, and automated infrastructure alerts fired.

   Remediation

   • Removed the cordon annotation so pods could be rescheduled
   • Deleted stuck 1.30 nodes to force their recreation
   • Added a new node group of 20 nodes running 1.30 by hand
   • Cordoned and drained all old 1.29 nodes onto the new 1.30 nodes

   Action items

   • Raise an AWS Production System Down support case (Case ID: 174229643100496)
   • Get guidance from AWS support on querying control-plane logs to find the root cause of similar issues
   • Document a runbook for emergency scaling of a new node group in case of unexpected capacity shortages
   • Alert on an imbalance between the autoscaling group and the Kubernetes nodes
   • Review the descheduler configuration to understand why it throws pods off cordoned nodes, and fix it where possible
   • Alert on spikes in the pending pod count

   Lessons

   The write-up lists review actions rather than lessons. They show the team had no documented way to add an emergency node group, no alert on a mismatch between the autoscaling group and the nodes Kubernetes sees, no alert on a spike in pending pods, and no clear understanding of how the descheduler treats cordoned nodes.

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2. IL-0070 Critical pods on core nodes evicted when Prometheus began scraping about 200 nodes after a dask-gateway scale-up

   2i2c2023

   Symptoms

   The hub pod of the prod JupyterHub on the leap cluster (leap.2i2c.org) restarted unexpectedly during a large node scale-up, and a user opened a support ticket. The ingress-nginx and proxy pods kept running.

   Pod evictionPods Pending

   Trigger

   A user's dask-gateway workload added about 100 dask-worker nodes within a minute, and Prometheus started scraping the metrics exporters on about 200 nodes.

   Root cause

   Capacity exhaustion

   Component

   PrometheusNode pool

   Contributing factor

   No headroomExcessive blast radiusMonitoring blind spot

   Detection

   A user support ticket (2i2c Freshdesk ticket 414) about the leap hub; the engineer then looked at Grafana and the cluster's nodes and events.

   Action items

   • Configure CPU and memory requests for the hub and proxy pods (#2127; at least 100m CPU was proposed)
   • Make the Grafana OOMKiller dashboard work (#2213)
   • Move LEAP cloud infrastructure to shared nodes (#2209)
   • Update resource requests and limits, mainly for ingress-nginx and Prometheus (#2324)
   • Decide whether Prometheus should scrape dask worker pods (#2366)

   Lessons

   Prometheus load grows with the number of nodes, so a burst of autoscaled nodes can push a nearly full core node over the edge and evict the pods that matter most. Core pods that request 10m of CPU get a tenth of the CPU share of busy neighbours that request 100m. Kubernetes events expire after an hour, so evidence of OOM kills needs a dashboard that keeps it.

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