Cases15 cases

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1. IL-0193 A GCP persistent disk degradation took down a Cassandra StatefulSet whose OrderedReady policy blocked recovery, and Metrictank could not reconnect to the recreated pods, causing a 23-hour Graphite query outage

   Grafana Labs2019

   Symptoms

   An alert fired because some Metrictank instances could not drain their write queue, which meant they could not write to Cassandra. Google had not yet published an incident, but a team member's Discord server, also hosted on GCP, was down, which pointed at GCP; Google confirmed an SSD persistent disk incident about 90 minutes after it began.

   High error rateNode NotReadyPods PendingService outage

   Trigger

   A Google Cloud incident in which SSD persistent disks performed so poorly that many I/O operations failed for an extended period.

   Root cause

   Cloud provider outage

   Component

   Persistent volumes and stateful setsApplication databaseNode root disk

   Contributing factor

   Overlapping failuresUnpatched known bugUnverified assumption

   Detection

   An alert that Metrictank write instances could not flush their write queue to Cassandra. Error rates alone rose too slowly to notice quickly, because most queries were served from memory.

   Remediation

   • Added compute nodes hoping new nodes could attach the disks, which did not work
   • Deleted and recreated the Cassandra StatefulSet with an updated pod management policy, so all pods but one started
   • Raised Kafka topic retention to avoid data loss during the long downtime
   • Temporarily added nodes so Metrictank restarts were not slowed by CPU starvation
   • Restarted all Metrictank instances, which took more than 20 hours, so they connected to the new Cassandra IPs

   Action items

   • Re-instantiate the gocql connection in Metrictank when it is detected dead, so it reconnects even when all Cassandra IPs change
   • Fix the Metrictank write-queue deadlock by updating an internal data structure with atomics instead of a lock

   Lessons

   An OrderedReady StatefulSet cannot recover past a single pod whose volume will not attach; when every pod is down, the ordering that protects normal start-up blocks the whole cluster. A client that learns peer addresses only from live peers needs a way to go back to the service name when all peers are replaced at once. A long-tolerated bug with a config workaround can surface at the worst time; this one turned out to have a simple fix. Writing incoming data to a Kafka write-ahead log first meant all data could still be ingested after recovery, and Kafka on non-SSD disks escaped the disk incident. With both Metrictank bugs fixed, the team expects a similar event to take less than 3 hours to recover from instead of 23.

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2. IL-0039 New Kubernetes worker nodes could not join any cluster because a package URL hardcoded in kops nodeup broke

   FREE NOW2019

   Symptoms

   At 16:00 CEST a developer reported in the #ask-platform Slack channel that a deployment to the Prelive cluster was failing, and a second report followed at 16:06.

   Pods PendingScale-up failure

   Trigger

   Roughly two to three days earlier, the CentOS repository mirror was restructured and container-selinux-2.68-1.el7.noarch.rpm moved, which made the static download URL hardcoded in kops nodeup invalid.

   Root cause

   Dependency failure

   Component

   Node operating system imageNode pool

   Contributing factor

   Monitoring blind spot

   Detection

   Developers asked for help in the #ask-platform Slack channel because their deployments were failing.

   Remediation

   • downloaded the package by hand on the Prelive nodes so their bootstrap could finish
   • changed the cluster AMI from Amazon Linux 2 to Debian and applied it to all clusters

   Action items

   • Create an alert that shows when nodes cannot join the cluster, possibly from information the cluster autoscaler already has
   • Document the external dependencies of node startup and look for ways to reduce them
   • Change the AMI back to Amazon Linux 2 Minimal once kops fixes the issue
   • Document node troubleshooting better: what happens during bootstrap and where the logs are

   Lessons

   Applying cluster changes through kops and Jenkins worked well, and troubleshooting quickly showed that the failing deployments came from missing cluster capacity. What went wrong was that nobody noticed, over a long period, that some autoscaling groups held more worker instances than Kubernetes had nodes. The team was lucky that no large number of production spot instances was terminated during the problem and that it was noticed during office hours.

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3. IL-0014 A GKE upgrade to a withdrawn version stalled on slow drains and a stuck node pool, then broke an ingress and confused the HPA

   loveholidays2019

   Symptoms

   On the evening of a long-overdue upgrade of a loveholidays production GKE cluster from 1.10.X to 1.12.5-gke.10, planned to take 2 to 2.5 hours, the master upgrade and the first two 7-node NodePools went smoothly. After that the NodePool upgrades slowed to a crawl. Each node is cordoned, drained and upgraded in turn. Even a 14-node cluster at about 5 minutes per node took over an hour, and with about 100 more nodes to go, some of them taking over 15 minutes to drain, the sequential drains were too slow to finish at a reasonable hour.

   Upgrade stallPods PendingScale-up failureService outageAutoscaler misbehaviour

   Trigger

   A manual upgrade of the GKE masters and NodePools from 1.10.X to 1.12.5-gke.10, two versions at once, on 19 March 2019; GKE's release notes of 14 March had already said that version was no longer available for new clusters or master upgrades because masters showed elevated error rates, but it could still be selected.

   Root cause

   Cloud provider outage

   Component

   GKE control planeNode poolCluster autoscalerIngress controllerHorizontal pod autoscaler

   Contributing factor

   Unrepresentative stagingOverlapping failuresIgnored early signal

   Detection

   The slow drains, zombie nodes and stuck NodePool were seen by the engineer running the upgrade; the broken Ingress was noticed after the upgrade and explained by Google support; the HPA problem was noticed the next day.

   Remediation

   • drained the remaining NodePool nodes ahead of the upgrade with kubectl drain --ignore-daemonsets --delete-local-data
   • deleted the zombie instances from the managed instance group with gcloud compute instance-groups managed delete-instances
   • cancelled the stuck UPGRADE_NODES operation with gcloud beta container operations cancel
   • used kubectl port-forward in place of the broken internal Ingresses
   • scaled down the older of two active ReplicaSets, or triggered a dummy deployment, to bring the HPA back

   Action items

   • Alert when a HorizontalPodAutoscaler is at 70% and at 100% of its capacity
   • Alert when a deployment has had two active ReplicaSets for 30 minutes and for 60 minutes
   • Re-evaluate termination grace periods that were set to arbitrary large values
   • Read the GKE release notes before every cluster upgrade
   • Use auto-upgrade in non-production environments, and manual cluster upgrades with automatic node upgrades in production
   • Keep environments as identical as possible, including resource names

   Lessons

   Read the release notes before upgrading: the target version had been withdrawn five days earlier. Drain time depends on pod configuration, so emptyDir volumes, long grace periods and missing disruption budgets turn a NodePool upgrade into hours. Pre-production only catches problems like the ingress bug if it matches production down to resource names. Auto-upgrades in non-production surface problems early, and a mix of manual cluster upgrades and automatic node upgrades in production keeps clusters current without much effort.

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4. IL-0038 kubelet rollout hit a Kubernetes bug and left every node in a cluster NotReady, triggering mass pod eviction

   Oath2018

   Symptoms

   During a rolling update of a kubelet change in one of Oath's on-premises production clusters, nodes started going NotReady, and soon all nodes in the cluster were NotReady.

   Node NotReadyPod evictionPods Pending

   Trigger

   A change to kubelet was rolled out across the nodes of one cluster; on restart, kubelet cleans up transient cgroup files, and a Kubernetes bug in that step left kubelet stuck instead of starting.

   Root cause

   Software defect

   Component

   kubeletKubernetes controller manager

   Contributing factor

   No health probesExcessive blast radius

   Detection

   Nodes reported NotReady and the eviction graphs climbed while the kubelet rollout was in progress.

   Remediation

   • failed the affected data center over so users were routed to the next available data center

   Action items

   • Run a functional test of kubelet after each upgrade batch and certify it before the next 30% of nodes are updated

   Lessons

   Check kubelet after upgrading it before moving to the next batch; a simple curl against the kubelet API would have caught this. The node controller's eviction throttling and full disruption mode, which the speakers note is not well documented, kept a cluster-wide kubelet failure from evicting every pod.

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5. IL-0040 Parallel Helm installs saturated small gp2 root volumes on a kops cluster and left all three workers NotReady with the kubelet or Docker down

   Saltside2017

   Symptoms

   While running the CI process on a local machine to test an application Helm chart, the SRE lead watched the pods with watch kubectl get pods. All pods reached Running, and then some went back to Pending. Two hours later the problem had grown and some pods showed the phase Unknown.

   Pods PendingImage pull failuresNode NotReadyService outage

   Trigger

   A CI run installed the application's Helm charts for all four markets (Efritin.com, Tonaton.com, Ikman.lk and Bikroy.com) on the nonproduction cluster at the same time.

   Root cause

   Capacity exhaustion

   Component

   Node root diskkubeletContainer runtimeHelm

   Contributing factor

   Unreviewed defaultsMonitoring blind spotIgnored early signalSingle point of failure

   Detection

   The SRE lead saw pods go from Running back to Pending while watching kubectl get pods during the CI run; no monitoring raised an alert, even when all three workers were not ready.

   Remediation

   • terminated the three worker nodes and let the auto scaling group replace them

   Action items

   • Fix the Datadog integration for the nonproduction AWS account and repeat the installs with telemetry
   • Increase the worker root EBS volumes from 20GB to 120GB
   • Keep common base images pulled on every node with a DaemonSet until kops supports user hooks
   • Configure different allocation limits for the different layers in Kubernetes
   • Discuss a highly available Tiller with the Helm team
   • Find a way to throttle the number of newly created pods

   Lessons

   An ordinary deploy of the application could collapse the cluster, because the default 20GB gp2 root volumes could not keep up with parallel image pulls and container starts. Without node metrics and pod phase metrics, three NotReady workers raised no alert. A single Tiller replica can block the deploy that would fix an outage.

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