Cases4 cases

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1. IL-0138 A failed Nvidia driver build left broken kernel packages on the only Kubernetes master node, which hit a kernel panic on reboot after a power outage and took the homelab cluster down for six days

   Barush Mendez2025

   Symptoms

   Every service in the homelab Kubernetes cluster stopped answering: the V-Rising server, Grafana, Jellyfin and Linkding were all unreachable, and the Kubernetes API was down, so the cluster could not be managed at all. The outage was found by hand, about 3 hours after it began, when someone tried to use the services.

   Control plane unresponsiveService outageMonitoring outage

   Trigger

   A power outage forced the Kubernetes master node to reboot.

   Root cause

   Software defect

   Component

   GPU driverLinux kernelKubernetes API server

   Contributing factor

   Ignored early signalChange with a delayed effectSingle point of failureMonitoring blind spot

   Detection

   Manually, when someone tried to access the services; there were no automated alerts.

   Remediation

   • Connected a monitor to the master node and read the boot logs, which showed the kernel panic
   • Booted the previous kernel version, which brought the system back
   • Removed the broken Nvidia packages with sudo apt-get remove --purge '^nvidia-.*' and ran sudo dpkg --configure -a
   • Found remaining broken packages with dpkg -l | grep -v ^ii and removed them by hand
   • Ran sudo apt-get install -f and reinstalled linux-headers-$(uname -r)
   • Rebooted and confirmed the kernel panic was gone

   Action items

   • Make sure GPU driver installations fully succeed, or revert immediately when they fail
   • Move the cluster to a high-availability control plane
   • Expose the Kubernetes API through a load balancer in the HA setup
   • Set up a ticketing system to record incidents and their resolution
   • Write predefined troubleshooting workflows to shorten response time
   • Add infrastructure monitoring such as Prometheus and Grafana
   • Add blackbox HTTP and TCP checks from outside the cluster for critical services

   Lessons

   A driver installation that fails half-way can leave kernel packages broken without any visible effect until the next reboot, which may come weeks later and at the worst time. A failed DKMS build should be fixed or reverted at once. With a single master node and no monitoring from outside the cluster, one unbootable machine meant a total outage that nobody was told about; the fix itself was simple once the boot logs were seen.

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2. IL-0060 Kubernetes 1.24 upgrade removed the master node label that Calico route reflectors selected on, dropping all pod routes and taking Reddit down for 314 minutes

   Reddit2023

   Symptoms

   About two minutes after an engineer started the Kubernetes 1.23 to 1.24 upgrade of the cluster running Reddit's legacy stack, just after 19:00 UTC, the site stopped. The CDN edge request graph, which is kept separate from the cluster, showed traffic by status collapsing. Users saw the error page, a homepage with no posts, or plain errors.

   Service outageHigh error rateDNS resolution failuresMonitoring outagePods stuck in ContainerCreatingControl plane lag

   Trigger

   An in-place upgrade of the legacy cluster from Kubernetes 1.23 to 1.24; in 1.24 the node-role.kubernetes.io/master label is removed even from running clusters.

   Root cause

   Breaking change in an upgrade

   Component

   CalicoKubernetes API serverAdmission webhooketcd

   Contributing factor

   Configuration not in codeUnrepresentative stagingUntested backupMonitoring blind spotSingle point of failure

   Detection

   The site broke about two minutes into the upgrade; an incident was opened immediately and responders were on the call within three minutes, working from CDN edge graphs because the cluster's own metrics were gone.

   Remediation

   • deleted the Open Policy Agent webhook configurations to stop API server timeouts
   • terminated all worker nodes of the cluster
   • restored the control plane from the pre-upgrade backup onto the first control plane node
   • switched off the cluster autoscaler until the control plane was stable
   • generated new TLS certificates so replacement control plane nodes could join etcd
   • brought traffic back in steps from 1% to 100%
   • restarted legacy services that had been stopped by hand

   Action items

   • Codify cluster configuration so every choice has a record, and document in detail what cannot be codified
   • Standardise components across clusters and replace bespoke configurations
   • Build tooling to manage the lifecycle of whole clusters so they can be recreated or replicated
   • Add pre-production clusters that can be tested with confidence
   • Improve the backup restore process and make cluster upgrades safe

   Lessons

   Configuration that exists only in a live cluster, edited by hand through a special tool, can be forgotten, as the route reflector setup was, and then break on an upgrade nobody connects it to. A Kubernetes upgrade cannot be reverted without a restore, so the restore procedure has to be kept current and practised. Consistent, codified clusters are what make upgrades testable; bespoke clusters keep producing outages.

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3. IL-0076 Kubernetes masters went down after Dex filled etcd with AuthRequest objects and deleting its namespace started an endless list-and-timeout loop

   Fullstaq2019

   Symptoms

   Dex, the OIDC proxy that handled Kubernetes authentication, stored its data in the Kubernetes API (storage type kubernetes, inCluster: true) and had built up a huge number of AuthRequest objects. Listing all AuthRequests timed out, and without the list they could not be deleted.

   Control plane unresponsiveMonitoring outage

   Trigger

   The dex namespace was deleted so that Kubernetes would clean up the accumulated AuthRequest objects itself.

   Root cause

   Capacity exhaustion

   Component

   Kubernetes API serveretcdCluster authentication provider

   Contributing factor

   Unreviewed defaultsHarmful manual actionRetry stormLimited debug accessIgnored early signal

   Detection

   The speaker says he had got hints of the problem earlier. While the masters were down, plenty of alerts arrived in Slack, but monitoring could not be reached because authentication and port-forwarding no longer worked.

   Remediation

   • removed the kubernetes finalizer from the dex namespace by calling the API directly (kill-kube-ns)
   • deployed Dex to a new namespace with sane defaults

   Lessons

   Dex with Kubernetes as its storage keeps every AuthRequest as an API object, and with a long TTL they pile up until the API cannot list them. Deleting a namespace that holds that many objects makes Kubernetes list them in a loop and can overload the masters. Monitoring that is reached through cluster authentication is lost when authentication is what broke.

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4. IL-0505 kubectl logs failed on GKE with "No SSH tunnels currently open" and mybinder.org build logs stopped reaching users

   Binder Project2019

   Symptoms

   On 20 February 2019 at 08:03 CET, `kubectl logs -f <pod>` stopped working for every pod in the mybinder.org cluster on GKE. Because pod logs could not be read, build logs were no longer forwarded to users, although the builds themselves ran normally.

   Monitoring outageDeploys failing

   Root cause

   Cloud provider outage

   Component

   GKE control planeKubernetes API server

   Contributing factor

   Limited debug access

   Remediation

   • Cordoned node gke-prod-a-users-b921bb88-rd5d so it would be removed from the pool once empty
   • Drained the node and removed it from the pool, after which kubectl logs worked again

   Action items

   • Test that kubectl logs works and notify when it does not
   • Add the command for retrieving API server logs to the SRE guide
   • Describe in the SRE guide how to identify suspicious node networking status

   Lessons

   The root cause was very difficult to identify, partly because it appears to sit in the Kubernetes master or the GKE service itself. Capturing `kubectl describe node` for the suspicious node would have allowed a comparison with healthy nodes, and a node that reports no ExternalIP or InternalIP in its status was likely a direct symptom of the problem and can be used as a diagnostic in the future.

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