Incident Library
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Cases17 cases

1 to 5 of 17

  1. Symptoms

    During performance testing of Pinterest's search system Manas on its new Kubernetes platform, a small but persistent share of search requests timed out. About one request in a million took 100 times longer than usual.

    Root cause
    Component
    Contributing factor
    Detection

    Performance testing with traffic sent to a test cluster showed a small but persistent percentage of requests timing out.

    Remediation
    • Disabled cAdvisor's working set size estimation on all PinCompute nodes
    Lessons

    CPU shielding does not fully isolate a process from its neighbours. Showing early that the node image was not the cause narrowed the search and avoided dead ends. Simple blackbox debugging, breaking things until the system stops working, works as a way of bisecting the problem.

  2. Symptoms

    On a Saturday, an OpsGenie alert fired for a ClickHouse cluster in Altinity.Cloud that had gone silent: no queries, no metrics, and no logs from customers trying to connect. The pods were running and the nodes looked healthy, but no traffic reached the database. Other clusters soon showed the same thing, and external access was blocked across several GKE clusters.

    Trigger

    GKE automatically upgraded worker nodes to the ubuntu_containerd image 1.32.3-gke.1785003, which ships kernel 6.8.0-1022-gke.

    Root cause
    Component
    Contributing factor
    Detection

    An OpsGenie alert fired when one ClickHouse cluster stopped receiving queries, metrics and customer connection logs.

    Remediation
    • added maintenance exceptions to pause all upgrades on the GKE clusters that were not yet affected
    • changed the load balancer health check policy to ignore failed kube-proxy health checks, so traffic flowed to the nodes again
    • began migrating the affected clusters from the ubuntu_containerd to the cos_containerd node image by recreating nodes
    Action items
    • Expand image pre-testing pipelines to catch regressions earlier
    • Enable notifications for upcoming GKE auto-upgrades
    • Make GKE maintenance windows required across the fleet to control when upgrades roll out
    • Track Google's issue and wait for a patched Ubuntu image
    Lessons

    A managed node upgrade can break kube-proxy in a way that leaves pods and nodes looking healthy while the load balancer sends nothing, because the load balancer health check depends on kube-proxy. kube-proxy's own logs showed the cause. Altinity recommends that GKE users on ubuntu_containerd restore traffic by switching to externalTrafficPolicy: Cluster, which disables the kube-proxy health check in the load balancer, move production workloads to cos_containerd, and pause auto-upgrades where possible until a patched image has been confirmed and tested.

  3. Symptoms

    From 18:05 UTC on March 17, 2025, GitHub.com web and API requests failed now and then for a small percentage of users, mostly requests about issues and pull requests. At 18:39 UTC the status page reported degraded performance for Issues.

    Trigger

    A framework upgrade rolled out to GitHub's Kubernetes infrastructure caused kernel panics.

    Root cause
    Component
    Contributing factor
    –
    Detection

    The status page opened the incident at 18:39 UTC, 34 minutes after the failures began, as an investigation of reports of degraded performance for Issues.

    Remediation
    • Downgraded the framework upgrade that caused the kernel panics
    • Disabled the problematic feature of the framework
    Action items
    • Investigate why the upgrade caused the kernel panics
    • Take steps to temporarily prevent the problem from coming back
    • Work out longer-term patch plans
    • Improve observability so that similar classes of problems can be reacted to quickly
  4. Symptoms

    Every service in the homelab Kubernetes cluster stopped answering: the V-Rising server, Grafana, Jellyfin and Linkding were all unreachable, and the Kubernetes API was down, so the cluster could not be managed at all. The outage was found by hand, about 3 hours after it began, when someone tried to use the services.

    Trigger

    A power outage forced the Kubernetes master node to reboot.

    Root cause
    Component
    Contributing factor
    Detection

    Manually, when someone tried to access the services; there were no automated alerts.

    Remediation
    • Connected a monitor to the master node and read the boot logs, which showed the kernel panic
    • Booted the previous kernel version, which brought the system back
    • Removed the broken Nvidia packages with sudo apt-get remove --purge '^nvidia-.*' and ran sudo dpkg --configure -a
    • Found remaining broken packages with dpkg -l | grep -v ^ii and removed them by hand
    • Ran sudo apt-get install -f and reinstalled linux-headers-$(uname -r)
    • Rebooted and confirmed the kernel panic was gone
    Action items
    • Make sure GPU driver installations fully succeed, or revert immediately when they fail
    • Move the cluster to a high-availability control plane
    • Expose the Kubernetes API through a load balancer in the HA setup
    • Set up a ticketing system to record incidents and their resolution
    • Write predefined troubleshooting workflows to shorten response time
    • Add infrastructure monitoring such as Prometheus and Grafana
    • Add blackbox HTTP and TCP checks from outside the cluster for critical services
    Lessons

    A driver installation that fails half-way can leave kernel packages broken without any visible effect until the next reboot, which may come weeks later and at the worst time. A failed DKMS build should be fixed or reverted at once. With a single master node and no monitoring from outside the cluster, one unbootable machine meant a total outage that nobody was told about; the fix itself was simple once the boot logs were seen.

  5. Symptoms

    A team using Neco, the Kubernetes platform run by Cybozu's Cloud Platform team, reported what looked like a performance problem in the cluster DNS servers. An application in a pod that resolved cluster Services at hundreds of requests per second frequently got `no such host` and `i/o timeout` errors.

    Trigger

    The number of MySQL clusters watched by the monitoring application increased, and after that the name resolution errors became frequent.

    Root cause
    Component
    Contributing factor
    Detection

    A team using the platform contacted the Cloud Platform team, describing the errors as a performance problem in the cluster DNS server.

    Remediation
    • Raised the kernel parameter netdev_max_backlog on the nodes
    • Set up alerts on softnet
    • Wrote a runbook for the softnet alerts
    Action items
    • Evaluate Cilium's netkit device so pod packets bypass the backlog queue
    Lessons

    Raising netdev_max_backlog makes the same failure less likely and the new alerts catch it early, but it is not a root fix: a pod that sends more packets can fill the backlog queue again. Cybozu sees replacing the veth interface with netkit, which skips the backlog queue, as the root fix.

Check your cluster for this

These 17 cases involve Linux kernel and Node operating system image. kubegap audits a Kubernetes cluster for gaps like these, read-only, from Claude Code or Codex; its checks cite public reports like the ones in this library.

By root cause5

Software defect7 cases

  1. IL-0247 One in a million search requests took 100 times longer on Pinterest's Manas leaf nodes after moving to Kubernetes
  2. IL-0138 A failed Nvidia driver build left broken kernel packages on the only Kubernetes master node, which hit a kernel panic on reboot after a power outage and took the homelab cluster down for six days
  3. IL-0112 The daily node rollover put DFDS's EKS nodes on an AMI later recalled for a kernel issue, causing "PLEG is not healthy" NodeNotReady flaps and pod network timeouts
    DFDS2022
  4. IL-0462 Some MySQL pods on Shopify's GKE clusters took up to 30 minutes to start, slowing instance replacement
  5. IL-0029 Slow user-facing services from CPU throttling on containers that used far less CPU than their limit
    Buffer2020
  6. IL-0012 CPU limits and an unpatched kernel CFS quota bug throttled multi-threaded services into stalls, failed health checks and timeouts
    Omio2020
  7. IL-0143 GKE nodes upgraded to certain 1.13 and 1.14 versions had an elevated number of kernel panics, fixed by releases that downgraded the Container-Optimized OS image

Breaking change in an upgrade2 cases

Organisation
  1. IL-0079 A GKE node auto-upgrade to an ubuntu_containerd image with a kernel regression left kube-proxy unable to apply its ip6tables rules, so load balancer health checks failed and several clusters lost all ingress traffic
  2. IL-0201 A framework upgrade caused kernel panics in GitHub's Kubernetes infrastructure, and GitHub.com web and API requests, mostly for issues and pull requests, failed intermittently for about 16 hours
    GitHub2025

Capacity exhaustion4 cases

  1. IL-0440 Pods on Cybozu's Neco Kubernetes platform got frequent no such host and i/o timeout DNS errors from dropped packets
    Cybozu2024
  2. IL-0176 Prometheus in a 235-node Kubernetes cluster crash-looped because over two million series exhausted host memory and the kernel OOM killer chose it first, as Burstable QoS gave it oom_score_adj 999
    LINE2020
  3. IL-0064 CPU-heavy pods packed onto one Google Cloud node drove it to kernel panics, and the crash moved from node to node until the site was down
  4. IL-0472 Node-to-pod traffic and DNS failed on Tinder's 605-node Flannel cluster when every node's ARP cache passed gc_thresh3
    Tinder2019

Configuration change2 cases

  1. IL-0153 DOKS worker nodes went NotReady at 06:00 UTC on three days because a systemd timer in the Debian image ran apt upgrade and killed it mid kernel upgrade, breaking node networking
  2. IL-0461 Every rollout of Datadog's metrics query service on Kubernetes raised errors that the logs blamed on DNS

DNS or network fault2 cases

Organisation
  1. IL-0057 Higher p99 latency after moving a reverse proxy to EKS, from outgoing connections delayed by a SNAT conntrack race
    Prezi2019
  2. IL-0047 Pod-to-pod requests delayed by 5, 10 or 15 seconds because of DNS lookups lost to a conntrack race