Cases4 cases

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1. IL-0201 A framework upgrade caused kernel panics in GitHub's Kubernetes infrastructure, and GitHub.com web and API requests, mostly for issues and pull requests, failed intermittently for about 16 hours

   GitHub2025

   Symptoms

   From 18:05 UTC on March 17, 2025, GitHub.com web and API requests failed now and then for a small percentage of users, mostly requests about issues and pull requests. At 18:39 UTC the status page reported degraded performance for Issues.

   High error rateIntermittent timeouts

   Trigger

   A framework upgrade rolled out to GitHub's Kubernetes infrastructure caused kernel panics.

   Root cause

   Breaking change in an upgrade

   Component

   Linux kernel

   Contributing factor

   –

   Detection

   The status page opened the incident at 18:39 UTC, 34 minutes after the failures began, as an investigation of reports of degraded performance for Issues.

   Remediation

   • Downgraded the framework upgrade that caused the kernel panics
   • Disabled the problematic feature of the framework

   Action items

   • Investigate why the upgrade caused the kernel panics
   • Take steps to temporarily prevent the problem from coming back
   • Work out longer-term patch plans
   • Improve observability so that similar classes of problems can be reacted to quickly

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2. IL-0461 Every rollout of Datadog's metrics query service on Kubernetes raised errors that the logs blamed on DNS

   Datadog2022

   Symptoms

   From September 2021, each rollout of an update to Datadog's metrics query service, which serves real-time and historical metric data to the web frontend and to monitor evaluation, came with a rise in errors. Clients retried failed queries, so few errors reached users, but the retries slowed dashboards and monitors. The service's logs showed DNS errors stopping it from connecting to the data stores it depends on.

   High error rateDNS resolution failuresHigh latencyOOMKilledPacket lossStale endpoint routing

   Trigger

   Rollouts of the metrics query service, which delete the old pods. The client behaviour behind the failures came from an August 2021 rollout of the metrics query clients that applied round_robin as the new default gRPC load balancing policy.

   Root cause

   Configuration change

   Component

   conntrack tableCiliumLinux kernelCoreDNSClient-side DNS resolver and cacheexternal-dnsHTTP and RPC client library

   Contributing factor

   Change with a delayed effectRetry stormUnknown limitMonitoring blind spot

   Detection

   Errors rose during rollouts of the metrics query service, and the service's logs showed DNS errors when connecting to its data stores.

   Remediation

   • Raised the memory of the node-local-dns pods from 64 MB to 256 MB, which stopped the OOM kills but not the DNS errors
   • Tested larger instance types and confirmed that scaling up the service's infrastructure resolved the errors
   • Removed the custom gRPC reconnect parameters from the clients to restore the defaults

   Action items

   • Contribute a change to Cilium that adds an unreachable route for a deleted pod's IP so clients get an ICMP error

   Lessons

   The errors looked like DNS but were not. ENA metrics and VPC Flow Logs gave the visibility into VPC connection tracking that host metrics did not, and Cilium, Kubernetes and AWS networking interact in ways that can make reverse path filtering drop packets it should allow. DNS propagation time depends on many settings. The causes were changes Datadog had made itself, to work around a dependency bug, to resolve earlier incidents and to override default reconnect parameters, which looked safe at the time and showed their effects much later, when the link was hard to see.

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3. IL-0012 CPU limits and an unpatched kernel CFS quota bug throttled multi-threaded services into stalls, failed health checks and timeouts

   Omio2020

   Symptoms

   For about six months, applications on Omio's Google Kubernetes Engine clusters stalled at random: they got stuck, stopped answering health check requests or lost network connections, and nothing the team looked at explained why.

   CPU throttlingProbe failuresHigh error rateHigh latencyIntermittent timeoutsIntermittent connection failures

   Trigger

   Multi-threaded workloads running with CPU limits on nodes whose kernel did not yet have the fix for a known CFS quota bug that causes unnecessary throttling.

   Root cause

   Software defect

   Component

   Container CPU limitLinux kernelkubelet

   Contributing factor

   Unknown limitMonitoring blind spotUnpatched known bug

   Detection

   Months of random stalls and failed health checks led the team to read the cgroup cpu.stat throttling counters inside the pods, which showed far more throttling than the limits should allow.

   Remediation

   • removed CPU limits until the kernel with the CFS bug fix was deployed across all clusters

   Action items

   • Deploy the kernel with the CFS quota bug fix across all clusters
   • Monitor utilisation, saturation and error metrics, API latency and error rates to confirm the change behaves as expected

   Lessons

   A CPU limit is a time quota per 100 ms period, not a share of cores, so a multi-threaded container can be stopped for most of each period long before it uses the cores it was given, and a kernel bug can make that worse. Throttling is invisible in standard Kubernetes metrics and has to be read from the cgroup counters. Removing limits trades away protection against a container that takes a whole node, which is only acceptable when runtimes are tuned.

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4. IL-0064 CPU-heavy pods packed onto one Google Cloud node drove it to kernel panics, and the crash moved from node to node until the site was down

   Moonlight2019

   Symptoms

   On Friday, January 18, Moonlight's API began returning occasional errors that looked like connection problems with its Redis database. The API checks Redis on every authenticated request to validate the session. At the same time the Kubernetes monitoring reported some nodes and pods as unresponsive.

   High error rateIntermittent connection failuresNode NotReadyService outageSustained high node CPU

   Trigger

   The Kubernetes scheduler put several CPU-heavy pods on the same node, including all three replicas of the website and the server-side rendering pods.

   Root cause

   Capacity exhaustion

   Component

   Pod scheduling and placementLinux kernelDatabase

   Contributing factor

   Single point of failureUnverified assumptionAutomation amplification

   Detection

   API errors that looked like Redis connectivity problems, and Kubernetes monitoring that showed nodes and pods as unresponsive. Google Cloud Support later found the link between sustained 100% CPU and kernel panics.

   Remediation

   • added anti-affinity rules to all major deployments so their pods spread across nodes

   Action items

   • Keep working with Google Cloud support to find and fix the cause of the node kernel panics

   Lessons

   Three replicas give no fault tolerance if the scheduler places them all on one node; anti-affinity rules make the spread explicit. A node failure that comes from the workload itself moves with the workload when the scheduler reschedules it.

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