Cases4 cases

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1. IL-0206 Consul agents in GitLab.com's GKE pods were repeatedly OOM-killed, so the Rails pods lost database replica discovery and sent every query to the primary

   GitLab2022

   Symptoms

   On 2022-04-25 the Sidekiq Apdex (the share of background jobs that finish within a target time) dropped, and an engineer declared an incident in Slack at 15:13 UTC. Users saw intermittent slowness across GitLab.com, and asynchronous work such as pipeline creation and import and export took unusually long.

   High latencyDatabase overloadOOMKilledHigh error rate

   Trigger

   The Consul agent in GitLab.com's GKE pods had memory demand spikes that did not fit in the pods' 500MB memory limit, and the agent was killed again and again.

   Root cause

   Capacity exhaustion

   Component

   Container memory limitService discoveryApplication database

   Contributing factor

   –

   Detection

   An engineer declared the incident in Slack at 15:13 UTC after the Sidekiq Apdex dropped; the second event was found when monitoring detected an elevated error rate at 01:21 UTC on 2022-04-26.

   Remediation

   • planned at 16:13 to raise the per-user connection limit for the gitlab database user and the pgbouncer backend pools for the main database; changes were applied at 17:26 and confirmed at 17:47
   • raised the pod memory limits from 500MB to 1GB so the Consul agents survive memory spikes

   Action items

   • Monitor the Consul agents on GKE pods to see whether the 1GB memory limit keeps them healthy
   • Investigate the Consul memory demand spikes and what can be done beyond raising the hard memory limit

   Lessons

   When the local Consul agent that Rails uses for database service discovery keeps dying, Rails does not fail; it sends every query to the last known primary. What engineers saw was database saturation and slow background jobs, which pointed the investigation first at a recent pgbouncer pool change. The memory limit of the Consul agent in every pod therefore decided the load on the primary database.

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2. IL-0208 A GitLab chart bump that renamed Kubernetes Service and Deployment ports made the GCP load balancer reconfigure, and GitLab.com slowed down and returned intermittent 50x errors

   GitLab2022

   Symptoms

   At 07:53 UTC on 2022-03-31 the rate of 50x errors on GitLab.com went up, and at 07:54 PagerDuty paged the engineer on call (EOC) about the rising error rate. Users saw slow pages and intermittent 50x error pages. The incident lists the Web, API, Git and Pages services as affected.

   High error rateHigh latencyIntermittent timeouts

   Trigger

   A k8s-workloads/gitlab-com pipeline deployed merge request !1643, a GitLab chart bump that changed the port names of Kubernetes Services and Deployments (related to the Prometheus service and pod monitors), starting with the canary environment gprd-cny at 07:49 UTC.

   Root cause

   Configuration change

   Component

   HelmCloud load balancerHAProxy

   Contributing factor

   Automation amplification

   Detection

   A PagerDuty alert on the rising error rate paged the EOC at 07:54 UTC, one minute after the 50x errors went up. The engineer deploying the change noticed the errors and linked them to it.

   Remediation

   • drained the canary environment and re-enabled it after twenty minutes
   • cancelled the deployment jobs for clusters c and d before they started
   • drained gprd-us-east1-d in HAProxy and re-enabled it five minutes later
   • raised the minimum replica count above 100 (merge request !1650)
   • drained gprd-us-east1-c in HAProxy, deployed the change to it, and re-enabled it
   • reverted the minimum replica increase (merge request !1652)

   Action items

   • Implement graceful draining of a whole regional cluster
   • Create a Chatops command that puts PagerDuty into maintenance mode

   Lessons

   Renaming ports on Kubernetes Services and Deployments behind a GCP load balancer made the load balancer reconfigure, and requests were slow or timed out until the new configuration had fully applied, which took minutes. GitLab notes that alerting worked well. The follow-up work is a way to drain a whole regional cluster gracefully and a Chatops command to put PagerDuty into maintenance mode.

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3. IL-0209 A too-high HPA CPU target kept GitLab.com web pods from scaling up as traffic moved from VMs to Kubernetes, breaching the web latency SLO for 15 minutes

   GitLab2021

   Symptoms

   The web service breached its latency SLO at 07:30 UTC and its Apdex dropped: some requests to the GitLab.com web front end slowed down for about 15 minutes. This happened while web traffic was being shifted from virtual machines to the web pods on Kubernetes, and the pods did not scale up as the traffic arrived.

   High latencyAutoscaler misbehaviour

   Trigger

   Shifting web traffic from VMs to Kubernetes pods during the GitLab.com web migration.

   Root cause

   Configuration change

   Component

   Horizontal pod autoscaler

   Contributing factor

   Unverified assumption

   Detection

   The web latency SLO breach at 07:30 UTC; an engineer declared the incident in Slack at 07:40.

   Remediation

   • Lowered the target CPU utilisation of the web pods' autoscaler to a more conservative value (merge request gitlab-com/gl-infra/k8s-workloads/gitlab-com!1149)

   Action items

   • Adjust the target utilisation for the web pods (gitlab-com/gl-infra/k8s-workloads/gitlab-com!1149)

   Lessons

   When traffic is moved onto pods that rely on CPU-based autoscaling, a CPU target set too high can keep the pods from scaling as the traffic arrives; GitLab fixed it by setting a more conservative target.

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4. IL-0205 The GKE cluster autoscaler could not add nodes to GitLab.com's production cluster because Google Cloud ran out of SSD persistent disks in us-east1

   GitLab2021

   Symptoms

   At 08:05 UTC on 2021-06-21 the API service's Apdex (the share of requests that finish within a target time) and Rails request queuing began trending the wrong way. At 09:01 the team found the API deployment unhealthy: it needed more pods for the day's growing traffic, but no new nodes could be added to give it pod capacity. Users saw slow responses; the review found no sign that error rates rose.

   Scale-up failureHigh latencyPods PendingDeploys failing

   Trigger

   Google Cloud ran out of SSD persistent disk stock in us-east1, the region GitLab.com runs in, while the API service needed more nodes for rising user traffic.

   Root cause

   Cloud provider outage

   Component

   Cluster autoscalerNode pool

   Contributing factor

   Monitoring blind spotLimited debug accessOverlapping failures

   Detection

   There was no alert on resource availability. Apdex and Rails queuing began trending the wrong way at 08:05 UTC and an engineer declared the incident in Slack at 08:43; finding the cause took a lot of log digging: cluster autoscaler errors about node pools in backoff, then ZONE_RESOURCE_POOL_EXHAUSTED at the instance-group level, and finally Google Cloud support naming SSD as the exhausted resource.

   Remediation

   • added a node pool that uses pd-standard disks
   • scaled the new node pool by hand across all three zones to relieve the API
   • brought more pd-standard node pools online for the other blocked workloads
   • stopped production deployments and opened a Google Cloud support case about the cluster autoscaler not working with the new node pools
   • changed node pools and nodeSelectors so the remaining workloads ran on pd-standard nodes
   • removed the SSD-backed node pools after a day without problems

   Action items

   • Move Kubernetes services to pd-standard disks (delivery#1837)
   • Capture resource exhaustion errors as a metric

   Lessons

   A cloud region can run out of one specific resource, here SSD persistent disks, and the only error may be a generic ZONE_RESOURCE_POOL_EXHAUSTED that does not name it. GitLab could neither monitor nor reserve resource availability, so detection took 22 hours and the cause came from Google Cloud support. The workloads ran fine on pd-standard disks. A second problem found on the way, a cluster autoscaler that does not fall back to another matching node pool when one cannot scale, slowed the move to the new node pools.

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