Cases6 cases

5 to 6 of 6

1. IL-0075 Kubernetes API servers pegged on CPU when the cluster grew to about 290 nodes, traced to Datadog agents polling the API

   Civis Analytics2019

   Symptoms

   After Civis released its new script infrastructure on Kubernetes internally in September 2018, developers reported that kubectl commands were slow, and users intermittently could not start notebooks and services.

   Control plane lagControl plane unresponsiveHigh latencyHigh error rateDNS resolution failures

   Trigger

   Migrating clients' Python, R and container scripts from the in-house Bocce system to Kubernetes (the project called Croquet) pushed the cluster to about 290 EC2 instances under a large script load.

   Root cause

   Capacity exhaustion

   Component

   Kubernetes API serverTelemetry agentetcd

   Contributing factor

   Unknown limitUnverified assumptionMonitoring blind spotNo capacity planning

   Detection

   Developer reports of slow kubectl commands and user reports of notebooks and services failing to start, then high CPU on the master nodes.

   Remediation

   • moved internal users back to the old Bocce infrastructure
   • resized the three master nodes from m4.large to m4.4xlarge
   • changed the Datadog setup so per-node agents no longer polled the API server for service metadata
   • raised max-requests-inflight for non-mutating requests from 400 to 1200
   • grew the etcd EBS volumes from 20 to 100 GB (100 to 300 IOPS)
   • switched client scripts from the ClusterFirst DNS policy to Default

   Action items

   • Upgrade etcd from 2.2.1 to 3.x once Kops supports a safe migration
   • Solve the in-cluster DNS timeouts so client scripts can talk to other workloads in the cluster

   Lessons

   Kubernetes can reach thousands of nodes only after tuning, and third-party DaemonSets are a common cause of control plane load: an agent on every node that polls or watches the API server multiplies with the cluster size. Datadog, kube2iam and the fluentd metadata filter all showed this. A small configuration change often fixes it, but finding it took load testing and the API server access logs.

   View case
2. IL-0059 Single-master Kubernetes control plane kept dying because the kubelet restarted a healthy etcd on a failing kubeadm liveness probe

   NRE Labs2018

   Symptoms

   The daily NRE Labs statistics showed lesson activity collapsing, and kubectl could not reach the cluster: `The connection to the server 1.2.3.4:6443 was refused - did you specify the right host or port?`

   Control plane unresponsiveProbe failuresService outage

   Trigger

   Unknown. The liveness probe that kubeadm writes into the etcd static pod manifest (an `etcdctl get foo` against 127.0.0.1:2379, failureThreshold 8, timeoutSeconds 15) started failing. The author first suspected GCP maintenance the night before, but could not reproduce the probe failure by hand and does not know why it began.

   Root cause

   unknown

   Component

   etcdkubeletKubernetes API server

   Contributing factor

   Single point of failureUnreviewed defaultsHarmful manual actionIgnored early signalMonitoring blind spot

   Detection

   The author saw lesson activity drop in the daily NRE Labs statistics during his morning routine.

   Remediation

   • removed the liveness probe section from the kubeadm-generated etcd static pod manifest and applied it between etcd restarts

   Action items

   • Add monitoring, especially for the single-node master
   • Run a basic "down for maintenance" page in Google Cloud Functions that points to Twitter for updates, to redirect to during outages

   Lessons

   Because all of the infrastructure is managed as code, the cluster could be rebuilt quickly, but destroying it before finding the cause also destroyed the evidence. Monitoring matters, especially with a single-node master. Read the restart counts in kubectl output, not just the Running status. Remember the fundamentals instead of expecting the issue to be more complicated than it is, and do not let the urgency of an outage push you into hasty decisions. Put up a maintenance page instead of leaving the site failing halfway.

   View case

By root cause5