Cases12 cases

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1. IL-0079 A GKE node auto-upgrade to an ubuntu_containerd image with a kernel regression left kube-proxy unable to apply its ip6tables rules, so load balancer health checks failed and several clusters lost all ingress traffic

   Altinity2025

   Symptoms

   On a Saturday, an OpsGenie alert fired for a ClickHouse cluster in Altinity.Cloud that had gone silent: no queries, no metrics, and no logs from customers trying to connect. The pods were running and the nodes looked healthy, but no traffic reached the database. Other clusters soon showed the same thing, and external access was blocked across several GKE clusters.

   Service outage

   Trigger

   GKE automatically upgraded worker nodes to the ubuntu_containerd image 1.32.3-gke.1785003, which ships kernel 6.8.0-1022-gke.

   Root cause

   Breaking change in an upgrade

   Component

   kube-proxyNode operating system imageLinux kernelCloud load balancer

   Contributing factor

   Unpatched known bugNo staged rollout

   Detection

   An OpsGenie alert fired when one ClickHouse cluster stopped receiving queries, metrics and customer connection logs.

   Remediation

   • added maintenance exceptions to pause all upgrades on the GKE clusters that were not yet affected
   • changed the load balancer health check policy to ignore failed kube-proxy health checks, so traffic flowed to the nodes again
   • began migrating the affected clusters from the ubuntu_containerd to the cos_containerd node image by recreating nodes

   Action items

   • Expand image pre-testing pipelines to catch regressions earlier
   • Enable notifications for upcoming GKE auto-upgrades
   • Make GKE maintenance windows required across the fleet to control when upgrades roll out
   • Track Google's issue and wait for a patched Ubuntu image

   Lessons

   A managed node upgrade can break kube-proxy in a way that leaves pods and nodes looking healthy while the load balancer sends nothing, because the load balancer health check depends on kube-proxy. kube-proxy's own logs showed the cause. Altinity recommends that GKE users on ubuntu_containerd restore traffic by switching to externalTrafficPolicy: Cluster, which disables the kube-proxy health check in the load balancer, move production workloads to cos_containerd, and pause auto-upgrades where possible until a patched image has been confirmed and tested.

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2. IL-0201 A framework upgrade caused kernel panics in GitHub's Kubernetes infrastructure, and GitHub.com web and API requests, mostly for issues and pull requests, failed intermittently for about 16 hours

   GitHub2025

   Symptoms

   From 18:05 UTC on March 17, 2025, GitHub.com web and API requests failed now and then for a small percentage of users, mostly requests about issues and pull requests. At 18:39 UTC the status page reported degraded performance for Issues.

   High error rateIntermittent timeouts

   Trigger

   A framework upgrade rolled out to GitHub's Kubernetes infrastructure caused kernel panics.

   Root cause

   Breaking change in an upgrade

   Component

   Linux kernel

   Contributing factor

   –

   Detection

   The status page opened the incident at 18:39 UTC, 34 minutes after the failures began, as an investigation of reports of degraded performance for Issues.

   Remediation

   • Downgraded the framework upgrade that caused the kernel panics
   • Disabled the problematic feature of the framework

   Action items

   • Investigate why the upgrade caused the kernel panics
   • Take steps to temporarily prevent the problem from coming back
   • Work out longer-term patch plans
   • Improve observability so that similar classes of problems can be reacted to quickly

   View case
3. IL-0138 A failed Nvidia driver build left broken kernel packages on the only Kubernetes master node, which hit a kernel panic on reboot after a power outage and took the homelab cluster down for six days

   Barush Mendez2025

   Symptoms

   Every service in the homelab Kubernetes cluster stopped answering: the V-Rising server, Grafana, Jellyfin and Linkding were all unreachable, and the Kubernetes API was down, so the cluster could not be managed at all. The outage was found by hand, about 3 hours after it began, when someone tried to use the services.

   Control plane unresponsiveService outageMonitoring outage

   Trigger

   A power outage forced the Kubernetes master node to reboot.

   Root cause

   Software defect

   Component

   GPU driverLinux kernelKubernetes API server

   Contributing factor

   Ignored early signalChange with a delayed effectSingle point of failureMonitoring blind spot

   Detection

   Manually, when someone tried to access the services; there were no automated alerts.

   Remediation

   • Connected a monitor to the master node and read the boot logs, which showed the kernel panic
   • Booted the previous kernel version, which brought the system back
   • Removed the broken Nvidia packages with sudo apt-get remove --purge '^nvidia-.*' and ran sudo dpkg --configure -a
   • Found remaining broken packages with dpkg -l | grep -v ^ii and removed them by hand
   • Ran sudo apt-get install -f and reinstalled linux-headers-$(uname -r)
   • Rebooted and confirmed the kernel panic was gone

   Action items

   • Make sure GPU driver installations fully succeed, or revert immediately when they fail
   • Move the cluster to a high-availability control plane
   • Expose the Kubernetes API through a load balancer in the HA setup
   • Set up a ticketing system to record incidents and their resolution
   • Write predefined troubleshooting workflows to shorten response time
   • Add infrastructure monitoring such as Prometheus and Grafana
   • Add blackbox HTTP and TCP checks from outside the cluster for critical services

   Lessons

   A driver installation that fails half-way can leave kernel packages broken without any visible effect until the next reboot, which may come weeks later and at the worst time. A failed DKMS build should be fixed or reverted at once. With a single master node and no monitoring from outside the cluster, one unbootable machine meant a total outage that nobody was told about; the fix itself was simple once the boot logs were seen.

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4. IL-0153 DOKS worker nodes went NotReady at 06:00 UTC on three days because a systemd timer in the Debian image ran apt upgrade and killed it mid kernel upgrade, breaking node networking

   DigitalOcean2023

   Symptoms

   Customers of DigitalOcean Managed Kubernetes (DOKS) saw worker nodes go NotReady between 06:00 and 07:00 UTC and stay unavailable, taking down the services on them, until the nodes were replaced or rebooted; some nodes needed several replacements or reboots. The first sporadic reports on October 8 said replacing the node fixed it. The same thing happened again around 06:00 UTC on October 9, more widely and across many regions, and again on October 10. Only clusters on versions 1.27.6-do.0 and 1.28.2-do.0 were affected.

   Node NotReadyService outage

   Trigger

   A systemd timer in the DigitalOcean Debian image started apt upgrade daily at 06:00 UTC, with a random delay of up to 60 minutes.

   Root cause

   Configuration change

   Component

   Node operating system imageLinux kernelkubelet

   Contributing factor

   Unreviewed defaultsLimited debug accessChange with a delayed effect

   Detection

   Sporadic customer reports of failed worker nodes arrived at 07:43 UTC on October 8; internal incident response started at 07:10 UTC on October 9 after broader impact across regions.

   Remediation

   • Advised customers to replace or reboot affected worker nodes
   • Arranged SSH and console access to worker nodes while they were healthy, and live-debugged an affected node on October 10
   • Released a DaemonSet to all affected clusters that disables the apt upgrade systemd timer on every worker node
   • Released new node images without the auto-update process

   Action items

   • Disable the timer during node provisioning, then remove the DaemonSet from all clusters
   • Add a check to the internal conformance test suite for new cluster versions that the auto-upgrade process and other unwanted timers stay disabled
   • Support logging into worker nodes even when normal access paths are broken

   Lessons

   An operating system auto-update timer left enabled in a node image can change the kernel and systemd underneath Kubernetes, and a timeout that kills the upgrade half-way can leave a node without networking. Failures that start at the same time every day point to a scheduled job on the nodes, and systemd timers belong on that list next to cron jobs. When the failure takes out a node's network, an investigation that depends on logging into the node stalls; access paths that work while the node is broken shorten diagnosis.

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5. IL-0112 The daily node rollover put DFDS's EKS nodes on an AMI later recalled for a kernel issue, causing "PLEG is not healthy" NodeNotReady flaps and pod network timeouts

   DFDS2022

   Symptoms

   On 2022-10-31 a planned upgrade of the vpc-cni EKS add-on, started from the deployment pipeline at 13:45 UTC, timed out at 14:10. Only about 10 of the 45 aws-node pods had upgraded, 5 were stuck in Terminating and the other 30 had not been attempted.

   Node NotReadyUpgrade stallIntermittent timeoutsIntermittent connection failures

   Trigger

   At 07:30 UTC on 2022-10-31 the daily node rollover replaced the existing nodes with nodes built from AMI v20221027, the latest AWS EKS node AMI, released on 2022-10-29 and later recalled because of a kernel issue.

   Root cause

   Software defect

   Component

   Node operating system imageLinux kernelkubeletAWS VPC CNINode launch templateTerraform

   Contributing factor

   No staged rolloutAutomation amplificationOverlapping failuresMonitoring blind spotNo health probes

   Detection

   The team noticed nodes flapping between NodeNotReady and NodeReady ("KubeletNotReady PLEG is not healthy") at 14:30 UTC while watching the stalled vpc-cni upgrade, about seven hours after the rollover. Time to detection was 7 hours. Alerting did not catch the NodeNotReady events or the socket growth.

   Remediation

   • cordoned, drained and deleted 15 stuck nodes one at a time to complete the vpc-cni upgrade
   • changed the Terraform infrastructure-modules so a specific AMI could be set
   • rolled the EC2 Auto Scaling group launch configuration back to the previous known good AMI through the pipeline

   Action items

   • Reach out to teams with suggestions about readiness and liveness probes
   • Create a dashboard for readiness and liveness probe coverage
   • Write a wiki article on readiness and liveness probes and their usefulness
   • Modify infrastructure-modules to allow specifying a particular AMI
   • Schedule a discussion on whether to take the latest AMI immediately and how to test new AMIs before they are deployed
   • Implement alerting on abnormal NodeNotReady events and on increased socket use
   • Create a learning path for Kubernetes within the team
   • Collect logs from nodes centrally
   • Create a Prometheus exporter that retrieves the latest available AMI, with a dashboard and alerts

   Lessons

   When a new node AMI has just been rolled out, upgrading other cluster components on the same day makes it hard to tell which change is causing trouble; here the vpc-cni upgrade on the same day confused matters. Taking the latest AMI automatically with no way to pin one meant a rollback first needed a Terraform change. The team also concluded that it needs better communication paths with application teams during incidents.

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