Cases3 cases

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1. IL-0231 Deleting EKS managed node groups also deleted Karpenter's instance profile, and every Stytch worker node shut down

   Stytch2023

   Symptoms

   On 23 February 2023 Stytch's EKS worker nodes went Ready:Unknown one after another, Karpenter failed to launch replacement nodes, and with fewer and fewer pods scheduled the Live Stytch API went down for 14 minutes, returning 5XX on every call.

   Node NotReadyScale-up failurePod evictionPods PendingService outage

   Trigger

   At 14:21 UTC Stytch landed a change to remove unused EKS managed node groups, because it had decided to run its data plane applications fully on nodes provisioned by Karpenter. Because Crossplane resources use an orphan deletion policy, engineers deleted the node groups in the AWS console, first in staging and then in production.

   Root cause

   Configuration change

   Component

   KarpenterNode poolConfiguration templating

   Contributing factor

   Unverified assumptionShared credentialChange with a delayed effectIgnored early signal

   Detection

   Low-urgency alerts that Karpenter could not find the instance profile fired in staging at 16:06 UTC and in production at 17:48 UTC but were not treated as an incident. The incident process started at 20:26 UTC when node launch failures spiked the Karpenter error rate, and Kubernetes monitoring alerts in production followed at 20:44 UTC. The support team flagged the outage at 21:14 UTC.

   Remediation

   • Reverted the node group deletion, which recreated the managed node groups
   • Manually scaled up one of the Live API node groups with more and much larger nodes and removed its taints
   • Removed node selectors from the applications one after another so their pods could be scheduled

   Action items

   • Treat Karpenter errors as high-urgency alerts that page the on-call engineer
   • Tune cluster alerting thresholds to send a high-urgency page earlier
   • Add alerts for nodes that stay NotReady or Unknown for long periods
   • Raise the thresholds of other deployment alerts, such as unschedulable pods and replicas not available
   • Give Karpenter its own IAM instance profile, separate from the one used by the node groups
   • Separate other AWS resources that were shared between uses, specifically IAM and security groups
   • Rework the EKS and Karpenter configuration so system instance profiles are unique, static per cluster and generated by Karpenter
   • Introduce a cloud visualization tool for engineers making infrastructure changes
   • Add live system and product metrics to the status page
   • Ask AWS to confirm the undocumented actions and side effects of deleting a node group
   • Correct the shared use of IAM roles and security groups across the infrastructure

   Lessons

   The IAM role for Karpenter's self-managed nodes should never have been the same as the one for the managed node groups; sharing it is what let the node group deletion break Karpenter, and the roles had been left combined for speed and simplicity when Karpenter was first set up. The hours-long delay between the configuration change and its effect made the incident hard to assess, and AWS confirmed that this delay is expected, so Stytch will allow for it in future IAM instance profile changes.

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2. IL-0449 Pods on Enigmo's new EKS managed node groups kept restarting or stuck Terminating and the nodes became unusable

   Enigmo2020

   Symptoms

   Two or three days after Enigmo created EKS managed node groups and moved its pods there from the old node groups, the cluster suddenly became unstable: pods restarted again and again or could not stop and stayed around indefinitely, node CPU and memory load rose high, and the nodes became unusable from the cluster.

   Pods stuck in TerminatingSustained high node CPUMemory pressureNode NotReadyUpgrade stall

   Trigger

   Enigmo created EKS managed node groups that used an AMI containing the bug and moved its pods onto them, as preparation for upgrading EKS from 1.15 to 1.16.

   Root cause

   Breaking change in an upgrade

   Component

   Node operating system imageNode pool

   Contributing factor

   Ineffective rollbackChange with a delayed effect

   Remediation

   • Changed the managed node groups' AMI version to the fixed release
   • Ran the managed node group update through CloudFormation
   • Watched the pods across all namespaces during the update
   • Force-deleted every pod that stayed in Terminating with kubectl delete --grace-period=0 --force

   Action items

   • Check the latest releases of the cluster's modules quarterly or monthly and upgrade them regularly

   Lessons

   As long as a team uses Amazon EKS or Kubernetes, it has to keep track of upgrades of the cluster and of modules such as ingress controllers, because a release with breaking changes can be announced without warning after a long stable period. Checking releases and upgrading on a regular schedule keeps the effect of each upgrade on the service small.

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3. IL-0467 Boskos crash-looped after a node drain started it from a buggy StatefulSet image, failing Kubernetes PR jobs for 9 hours

   Kubernetes project2019

   Symptoms

   Overnight into 26 March 2019 (PDT), every Prow test job that needed a GCP project from Boskos, the Kubernetes test-infra service that hands out GCP projects to test jobs, failed. The required job pull-kubernetes-e2e-gce failed on every run, so no pull request could be merged in kubernetes/kubernetes for just over nine hours, and other projects saw similar failures.

   Container crash loopService outage

   Trigger

   At 23:04 PDT the node running the only Boskos pod was drained to be replaced with a 1.13 node during the upgrade of the Prow clusters from Kubernetes 1.11 to 1.13. The replacement pod started from the StatefulSet's current spec, which named a newer Boskos image containing the bug.

   Root cause

   Faulty deployment

   Component

   CI systemNode pool

   Contributing factor

   Change with a delayed effectUnverified assumptionSingle point of failureNo alert on limitChange started before off-hours

   Detection

   Users reported the failure on GitHub at 02:50 and on Slack at 05:16 and 06:27, and an engineer saw the Slack reports on waking at 07:16. The Boskos monitoring dashboard showed the failure, but no alert caught it.

   Remediation

   • Built and deployed a new Boskos image with the bug fixed
   • Cleaned up the GCP projects that had been left open

   Action items

   • Change the Boskos configuration so that deployments actually take effect (#11956)
   • Automate Boskos deploys (#11957)
   • Improve alerting on Boskos status (#11953)

   Lessons

   The write-up lists what went poorly: a ten-hour upgrade was started shortly after 17:00 when on-call coverage ended at 18:00; deployments were not checked to confirm that something had actually rolled out; the Boskos StatefulSet was not set up to perform updates, so changing its spec left the old pod running; the December change appears never to have been tested; and Boskos was deployed by hand, unlike most of Prow, which left more room for error. Once people were available, the problem was fixed quickly.

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