Incident Library
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Cases69 cases

44 to 48 of 69

  1. Symptoms

    The hub pod of the prod JupyterHub on the leap cluster (leap.2i2c.org) restarted unexpectedly during a large node scale-up, and a user opened a support ticket. The ingress-nginx and proxy pods kept running.

    Trigger

    A user's dask-gateway workload added about 100 dask-worker nodes within a minute, and Prometheus started scraping the metrics exporters on about 200 nodes.

    Root cause
    Component
    Contributing factor
    Detection

    A user support ticket (2i2c Freshdesk ticket 414) about the leap hub; the engineer then looked at Grafana and the cluster's nodes and events.

    Action items
    • Configure CPU and memory requests for the hub and proxy pods (#2127; at least 100m CPU was proposed)
    • Make the Grafana OOMKiller dashboard work (#2213)
    • Move LEAP cloud infrastructure to shared nodes (#2209)
    • Update resource requests and limits, mainly for ingress-nginx and Prometheus (#2324)
    • Decide whether Prometheus should scrape dask worker pods (#2366)
    Lessons

    Prometheus load grows with the number of nodes, so a burst of autoscaled nodes can push a nearly full core node over the edge and evict the pods that matter most. Core pods that request 10m of CPU get a tenth of the CPU share of busy neighbours that request 100m. Kubernetes events expire after an hour, so evidence of OOM kills needs a dashboard that keeps it.

  2. Symptoms

    On 31 October 2022 at 6:27 PM Pacific time, users of the UToronto JupyterHub run by 2i2c could no longer log in or start their servers, and the hub answered with 500 errors. Users who were already logged in could keep using the hub.

    Trigger

    The JupyterHub log file, written to the same 10G disk as the hub's sqlite database, grew until the disk was completely full.

    Root cause
    Component
    Contributing factor
    Detection

    A user emailed 2i2c support at 7:13 PM that users could not log in; the team acknowledged the issue at 8:33 PM. There was no alert for the problem.

    Remediation
    • Compressed the hub log file into /tmp from a shell in the hub pod, because it could not be compressed in place on the full disk
    • Copied the compressed log to a local machine so the hub pod could be restarted without losing it
    • Resized the hub database disk (the hub-db-dir PVC) from 10G to 60G
    • Restarted the hub pod, which came back with the larger disk and restored service
    Action items
    • Stop keeping hub logs on the same disk as the hub database
    • Add a Grafana graph of free space on the JupyterHub database disk
    • Alert on elevated error rates
    Lessons

    Kubernetes dynamic volume resizing let the hub database disk grow from 10G to 60G without much effort. The risk of keeping logs on the database disk had been identified during the earlier migration, but the team had no solid process for following it through, and because no alert existed the team had to wait for a person to report the outage.

  3. Symptoms

    From 03:03 US/Pacific on 14 June 2022, calls to the GKE API in us-central1 through gcloud and the Google Cloud Console were slow and returned errors. Retrying sometimes succeeded.

    Trigger

    An unexpected increase in backend traffic to the GKE API in us-central1.

    Root cause
    Component
    Contributing factor
    Remediation
    • scaled up the GKE control plane to handle the increased traffic
    Lessons

    Client retries against an overloaded management API add to the overload. When the cloud provider's control plane is degraded, running workloads may be fine while cluster operations fail, and the status page offered no workaround beyond advising customers to use another region if they could.

  4. Symptoms

    On 2022-04-25 the Sidekiq Apdex (the share of background jobs that finish within a target time) dropped, and an engineer declared an incident in Slack at 15:13 UTC. Users saw intermittent slowness across GitLab.com, and asynchronous work such as pipeline creation and import and export took unusually long.

    Trigger

    The Consul agent in GitLab.com's GKE pods had memory demand spikes that did not fit in the pods' 500MB memory limit, and the agent was killed again and again.

    Root cause
    Component
    Contributing factor
    –
    Detection

    An engineer declared the incident in Slack at 15:13 UTC after the Sidekiq Apdex dropped; the second event was found when monitoring detected an elevated error rate at 01:21 UTC on 2022-04-26.

    Remediation
    • planned at 16:13 to raise the per-user connection limit for the gitlab database user and the pgbouncer backend pools for the main database; changes were applied at 17:26 and confirmed at 17:47
    • raised the pod memory limits from 500MB to 1GB so the Consul agents survive memory spikes
    Action items
    • Monitor the Consul agents on GKE pods to see whether the 1GB memory limit keeps them healthy
    • Investigate the Consul memory demand spikes and what can be done beyond raising the hard memory limit
    Lessons

    When the local Consul agent that Rails uses for database service discovery keeps dying, Rails does not fail; it sends every query to the last known primary. What engineers saw was database saturation and slow background jobs, which pointed the investigation first at a recent pgbouncer pool change. The memory limit of the Consul agent in every pod therefore decided the load on the primary database.

  5. Symptoms

    In 2020 Chatwork moved its legacy system from EC2 to EKS, running both sides in parallel with Route53 weighted records. Once more than a certain share of requests was sent to the EKS side, the service suddenly became unstable. On some nodes the conntrack table had gone past its limit and connections to the application were being dropped.

    Trigger

    During the migration from EC2 to EKS, Chatwork sent more than a certain share of requests to the EKS side. Later, applying node-local-dns with force_tcp in its configuration made DNS unstable again.

    Root cause
    Component
    Contributing factor
    Remediation
    • Raised the conntrack maxPerCore value in the kube-proxy configuration
    • Installed dns-autoscaler so CoreDNS ran with more pods
    • Installed node-local-dns as a DaemonSet on every node
    • Replaced force_tcp with prefer_udp in the node-local-dns configuration
    Lessons

    On EKS, dns-autoscaler and node-local-dns made DNS stable, but node-local-dns must not use force_tcp there. Stable DNS also matters for sizing the number of pods correctly, since blocked DNS queries had made the pod count grow.

Check your cluster for this

These 69 cases involve Container memory limit and Node pool. kubegap audits a Kubernetes cluster for gaps like these, read-only, from Claude Code or Codex; its checks cite public reports like the ones in this library.

By root cause1

Capacity exhaustion69 cases

  1. IL-0071 Worker node running out of inodes while disk space looked fine, because containerd kept a full node_modules tree in each of several image layer snapshots
  2. IL-0102 CoreDNS pods on a production EKS cluster ran out of memory under a burst of new pods, endpoints and nodes, taking down the Buildkite web UI, APIs and job dispatch
  3. IL-0471 GitHub Actions runs failed or sat queued for 9 hours after a routine deployment's pod replacement saturated capacity
    GitHub2026
  4. IL-0155 Some DOKS clusters in NYC1 saw intermittent DNS timeouts and NodeNotReady events because CoreDNS ran on shared-CPU Droplet worker nodes
  5. IL-0470 Buildkite notifications were delayed after Prometheus storage filled and EKS notification workers could not autoscale
  6. IL-0548 Buildkite's EKS Prometheus server was killed for memory again and again, so services stopped scaling and jobs lagged
  7. IL-0435 Error rates rose as Aurora MySQL killed connections and declined queries to avoid OOM while load metrics stayed flat
  8. IL-0464 IONOS Managed Kubernetes control planes went unreachable for minutes at a time as their shared etcd grew and fragmented
  9. IL-0465 IONOS Container Registry image pushes and pulls failed with 504 Gateway Timeout
  10. IL-0350 Hosts in an IONOS TXL cluster lost connectivity when an InfiniBand fabric resweep failed on a full multicast table
  11. IL-0181 A traffic spike from an external community post pushed product API pods into CPU throttling under a 1-core limit, and an e-commerce product page slowed down while every pod stayed Running
    Kevin2026
  12. IL-0581 29CM product display servers lost pods and saturated Netty event loops on the first day of the Igu Week sale
  13. IL-0100 PostHog's feature flags pods were packed onto Kubernetes nodes that were too small for their CPU requests, and CPU saturation above 90% caused three outages in ten days through Redis overload, connection pool exhaustion and slow queries
  14. IL-0413 LLM inference engines timed out or ran out of resources under load in about 60% of 156 severe incidents at Microsoft
  15. IL-0048 DNS lookups timed out in a large EKS cluster when CoreDNS hit the 1024 packets-per-second link-local limit, driven by sudo hostname lookups
  16. IL-0067 Redis filled its persistent volume, corrupted its append-only file and crash-looped on every restart
  17. IL-0080 kube-dns on Mercari's GKE clusters could not keep up with peak-hour DNS query rates, and a Sev1 production outage followed when several services failed DNS resolution
  18. IL-0082 Losing one CoreDNS pod during a planned EKS node reroll overloaded the remaining CoreDNS pods, causing DNS timeouts and errors across multiple services at RebelMouse
  19. IL-0006 VPC subnets ran out of IP addresses because the AWS VPC CNI kept IPs on full nodes, and WARM_IP_TARGET changes then blocked pod starts after every pod deletion
    Neon2025
  20. IL-0099 User servers on 2i2c's Earthscope hub took over 15 minutes to start and kernels were killed during a workshop, because a profile option guaranteed 8 GB of memory with no limit on 32 GB nodes
    2i2c2025
  21. IL-0170 During a Lunar New Year event, traffic more than three times normal filled the nf_conntrack table on the EKS node running the Istio ingress gateway, dropping packets and taking down Backpackr's web and app services
  22. IL-0027 All CoreDNS pods landed on one node, the node ran out of memory, and DNS for the whole service went down
  23. IL-0085 A control plane node of Magic Pages' Kubernetes cluster on Hetzner Cloud ran out of memory, the cluster's own calls then used up the Hetzner API rate limit, and all customer websites were down for about 7.5 hours
  24. IL-0204 An etcd memory spike overloaded the control plane of a Render Frankfurt cluster, and DNS then failed because CoreDNS ran on the rebooted control plane nodes and could not start without the API server
    Render2024
  25. IL-0007 The AWS VPC CNI could not assign IP addresses to pods as an EKS cluster ran out of IPv4 space
  26. IL-0232 Calico pods in the codfw WikiKube cluster hit their resource limits and crash-looped, taking nodes out one by one
  27. IL-0440 Pods on Cybozu's Neco Kubernetes platform got frequent no such host and i/o timeout DNS errors from dropped packets
    Cybozu2024
  28. IL-0042 Application logs stopped reaching Elasticsearch and OpenSearch for hours and were lost when OpenSearch ran out of disk space
  29. IL-0044 Prometheus OOMKilled in a loop while replaying its write-ahead log after a kube-prometheus-stack upgrade
  30. IL-0182 Too few CoreDNS replicas on EKS were overloaded during traffic spikes, raising latency and cutting the network for task pods, and the over-provisioned, tightly spread CoreDNS pods added later blocked Karpenter consolidation
  31. IL-0046 Prometheus restarted again and again because its WAL replay took longer than the startup probe allowed
  32. IL-0110 A Grafana Agent pod's high memory use and crash-looping Hangfire pods drove a Kubernetes node into system OOM and NotReady, twice in one day
    DFDS2024
  33. IL-0168 Simultaneous cluster auto-upgrades overloaded Scaleway's Kubernetes API, and a node authentication retry loop kept Kapsule and Kosmos nodes NotReady in FR-PAR
  34. IL-0169 The Scaleway Kubernetes API in FR-PAR ran out of memory under simultaneous deployments, and because it also handled node authentication, Kapsule and Kosmos nodes went NotReady
  35. IL-0202 A burst of queries and database writes exhausted connection pools and memory on Honeycomb's ingest hosts, and Kubernetes crash-loop back-off kept failed hosts offline so ingest capacity stayed too low to recover
  36. IL-0386 After a move to Google Cloud, Postgres connection timeouts and memcached i/o timeouts spiked on GKE nodes
  37. IL-0433 Shifting API traffic from EC2 to EKS on Fargate overloaded two CoreDNS pods and caused mass name-resolution errors
  38. IL-0043 Application logs missing in Kibana after a newer Fluent Bit version changed its chunk drop strategy
  39. IL-0016 Prometheus on the live cluster ran out of memory and was OOMKilled, and the monitoring node it ran on went NotReady
  40. IL-0028 Temporal History service latency rose because its pods were CPU-throttled while CPU usage read below 60 percent
  41. IL-0195 The kube-apiservers of a cluster with more than 200 nodes ran out of memory and crashed one after another under mass LIST requests from Cilium agents
    Palark2023
  42. IL-0165 Some LKE users in Frankfurt could not reach their kube-apiservers with kubectl after backend services failed under memory constraints
    Linode2023
  43. IL-0194 After a kube-apiserver restart, pod LIST requests from every pod of a Vector DaemonSet nearly tripled etcd memory and restarted all master nodes
    Palark2023
  44. IL-0070 Critical pods on core nodes evicted when Prometheus began scraping about 200 nodes after a dask-gateway scale-up
    2i2c2023
  45. IL-0500 UToronto JupyterHub logins and server starts returned 500 errors when the hub's sqlite database disk filled up
    2i2c2022
  46. IL-0140 The GKE API in us-central1 returned errors and high latency for 3 hours 19 minutes after an unexpected rise in backend traffic that client retries made worse
  47. IL-0206 Consul agents in GitLab.com's GKE pods were repeatedly OOM-killed, so the Rails pods lost database replica discovery and sent every query to the primary
    GitLab2022
  48. IL-0445 Chatwork's service on EKS became unstable as conntrack tables on some nodes overflowed and connections were dropped
  49. IL-0094 Student pods filled the shared nodes of a JupyterHub cluster and starved the hub's core pods, freezing the hub
    2i2c2020
  50. IL-0093 Ingress controller pods crash-looped one after another because the leader pod had exhausted its shared memory
  51. IL-0176 Prometheus in a 235-node Kubernetes cluster crash-looped because over two million series exhausted host memory and the kernel OOM killer chose it first, as Burstable QoS gave it oom_score_adj 999
    LINE2020
  52. IL-0013 The conntrack table filled up on downsized GKE nodes and a high-traffic aggregation proxy saw climbing connection resets
  53. IL-0015 A GKE cluster's /16 pod address range ran out at 256 nodes, leaving new pods Pending and node scale-ups failing
  54. IL-0033 Uneven load across kube-dns pods and a DNS packets-per-second limit pushed service latency to 20 seconds
    Airbnb2019
  55. IL-0026 Kubernetes nodes hit SystemOOM because fluentd-sumologic log shipper pods had no memory limits
  56. IL-0002 CI builder pods could not get AWS IAM credentials because kubelet fell minutes behind its API rate limit
  57. IL-0076 Kubernetes masters went down after Dex filled etcd with AuthRequest objects and deleting its namespace started an endless list-and-timeout loop
  58. IL-0401 Prow jobs on the k8s-prow-build GKE cluster failed and merges stalled as nodes hit IOPS throttling and kernel panics
  59. IL-0037 Image registry rate-limited a whole region after a crash-looping DaemonSet with imagePullPolicy Always pulled through three NAT instances
  60. IL-0064 CPU-heavy pods packed onto one Google Cloud node drove it to kernel panics, and the crash moved from node to node until the site was down
  61. IL-0075 Kubernetes API servers pegged on CPU when the cluster grew to about 290 nodes, traced to Datadog agents polling the API
  62. IL-0472 Node-to-pod traffic and DNS failed on Tinder's 605-node Flannel cluster when every node's ARP cache passed gc_thresh3
    Tinder2019
  63. IL-0001 Cluster-wide DNS outage after CoreDNS pods were OOM-killed again and again under a burst of DNS queries
  64. IL-0031 Kubernetes API server OOM-killed, leaving the Skipper ingress without routes; the talk points to a misconfigured CronJob manifest
  65. IL-0518 gitlab.freedesktop.org on GKE ran short of volume space and a planned 30-minute storage upgrade became a 4-hour outage
  66. IL-0503 mybinder.org launches failed after a GKE node ran out of memory and its nginx-ingress proxy pod crash-looped
  67. IL-0036 A reindex Job that kept failing exhausted one node after another until the whole cluster was down
  68. IL-0040 Parallel Helm installs saturated small gp2 root volumes on a kops cluster and left all three workers NotReady with the kubelet or Docker down
  69. IL-0468 New JupyterHub student pods stuck Pending on MaxVolumeCount after a memory limit cut with node size unchanged