Cases22 cases

10 to 14 of 22

1. IL-0153 DOKS worker nodes went NotReady at 06:00 UTC on three days because a systemd timer in the Debian image ran apt upgrade and killed it mid kernel upgrade, breaking node networking

   DigitalOcean2023

   Symptoms

   Customers of DigitalOcean Managed Kubernetes (DOKS) saw worker nodes go NotReady between 06:00 and 07:00 UTC and stay unavailable, taking down the services on them, until the nodes were replaced or rebooted; some nodes needed several replacements or reboots. The first sporadic reports on October 8 said replacing the node fixed it. The same thing happened again around 06:00 UTC on October 9, more widely and across many regions, and again on October 10. Only clusters on versions 1.27.6-do.0 and 1.28.2-do.0 were affected.

   Node NotReadyService outage

   Trigger

   A systemd timer in the DigitalOcean Debian image started apt upgrade daily at 06:00 UTC, with a random delay of up to 60 minutes.

   Root cause

   Configuration change

   Component

   Node operating system imageLinux kernelkubelet

   Contributing factor

   Unreviewed defaultsLimited debug accessChange with a delayed effect

   Detection

   Sporadic customer reports of failed worker nodes arrived at 07:43 UTC on October 8; internal incident response started at 07:10 UTC on October 9 after broader impact across regions.

   Remediation

   • Advised customers to replace or reboot affected worker nodes
   • Arranged SSH and console access to worker nodes while they were healthy, and live-debugged an affected node on October 10
   • Released a DaemonSet to all affected clusters that disables the apt upgrade systemd timer on every worker node
   • Released new node images without the auto-update process

   Action items

   • Disable the timer during node provisioning, then remove the DaemonSet from all clusters
   • Add a check to the internal conformance test suite for new cluster versions that the auto-upgrade process and other unwanted timers stay disabled
   • Support logging into worker nodes even when normal access paths are broken

   Lessons

   An operating system auto-update timer left enabled in a node image can change the kernel and systemd underneath Kubernetes, and a timeout that kills the upgrade half-way can leave a node without networking. Failures that start at the same time every day point to a scheduled job on the nodes, and systemd timers belong on that list next to cron jobs. When the failure takes out a node's network, an investigation that depends on logging into the node stalls; access paths that work while the node is broken shorten diagnosis.

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2. IL-0459 MediaWiki on Kubernetes terminated TLS with a wrong certificate after a deployment, and 1% of requests failed

   Wikimedia Foundation2023

   Symptoms

   On 9 August 2023, right after a MediaWiki configuration deployment at 11:41 UTC, the MediaWiki deployments on Kubernetes terminated TLS with a wrong certificate, and about 1% of Wikimedia web and API traffic, around 120 requests per second, received errors for about 30 minutes. The issue was detected by a page for failed service probes on mw-api-ext and mw-api-int.

   High error rateTLS certificate errorsControl plane lag

   Trigger

   At 09:37 a change to the global Kubernetes defaults was merged that switched supported charts to cert-manager certificates. The next MediaWiki on Kubernetes deployment, a configuration change at 11:41, picked it up.

   Root cause

   Configuration change

   Component

   cert-managerHelm

   Contributing factor

   Change with a delayed effectNo configuration tests

   Detection

   A page from the ProbeDown alerts for mw-api-ext:4447 and mw-api-int:4446 at 11:47; a KubernetesAPILatency alert had fired at 11:46.

   Remediation

   • Identified the issue and prepared a patch, https://gerrit.wikimedia.org/r/947331
   • Redeployed the MediaWiki deployments on Kubernetes

   Action items

   • Review whether deployment procedures and testing should be strengthened, for example against surprising changes on the next deployment and with canary deployments for Kubernetes
   • Look at metrics that become unavailable or unhealthy during deployments, or at reducing the impact of deployments

   Lessons

   The cause was found quickly because the person who made the breaking change was responding. The change should have been caught by CI, but the repository it was made in (hieradata) does not run the CI of the deployment charts. Only 1% of traffic going to Kubernetes kept the impact small, and the low error volume made it slower to link the errors to Kubernetes.

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3. IL-0198 An automatic Ubuntu security update restarted systemd-networkd, which flushed the IP rules Cilium relied on and cut more than 60 percent of Datadog's Kubernetes nodes off the network across regions and cloud providers

   Datadog2023

   Symptoms

   Between 06:00 and 07:00 UTC on 8 March 2023, Kubernetes nodes in several Datadog regions lost network connectivity at the same time, on AWS, Google Cloud and Azure. All services across multiple regions were affected, including the regions that host Datadog's CI/CD and automation tools. Datadog's regions are not connected to each other and changes are rolled out one region at a time, so a simultaneous failure on several cloud providers looked implausible at first.

   Node NotReadyService outageThroughput degradation

   Trigger

   On 7 March 2023 Ubuntu published a systemd patch for a CVE (249.11-0ubuntu3.7). Ubuntu's default unattended upgrades installed it on the nodes between 06:00 and 07:00 UTC on 8 March, and installing it restarted systemd-networkd.

   Root cause

   Breaking change in an upgrade

   Component

   systemd-networkdCiliumNode operating system image

   Contributing factor

   Unreviewed defaultsChange with a delayed effectNo staged rolloutAutomation amplification

   Remediation

   • restarted thousands of disconnected instances on Google Cloud and Azure through the cloud APIs, keeping their local disks
   • rebuilt the data lost with terminated AWS instances' local disks through replication, reprocessing and restores from backup

   Lessons

   A change in a base operating system component can stay dormant for months until something restarts that component. Here the trigger was a security patch, and the change reached every region at once because automatic OS updates ran outside the progressive, region-by-region process used for every other change. Cloud providers react differently to an instance that loses its network. Google Cloud and Azure left the instances running, so a restart recovered them with their disks; AWS replaced them quickly, which brought stateless services back fast but destroyed the local-disk data the stateful services needed.

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4. IL-0231 Deleting EKS managed node groups also deleted Karpenter's instance profile, and every Stytch worker node shut down

   Stytch2023

   Symptoms

   On 23 February 2023 Stytch's EKS worker nodes went Ready:Unknown one after another, Karpenter failed to launch replacement nodes, and with fewer and fewer pods scheduled the Live Stytch API went down for 14 minutes, returning 5XX on every call.

   Node NotReadyScale-up failurePod evictionPods PendingService outage

   Trigger

   At 14:21 UTC Stytch landed a change to remove unused EKS managed node groups, because it had decided to run its data plane applications fully on nodes provisioned by Karpenter. Because Crossplane resources use an orphan deletion policy, engineers deleted the node groups in the AWS console, first in staging and then in production.

   Root cause

   Configuration change

   Component

   KarpenterNode poolConfiguration templating

   Contributing factor

   Unverified assumptionShared credentialChange with a delayed effectIgnored early signal

   Detection

   Low-urgency alerts that Karpenter could not find the instance profile fired in staging at 16:06 UTC and in production at 17:48 UTC but were not treated as an incident. The incident process started at 20:26 UTC when node launch failures spiked the Karpenter error rate, and Kubernetes monitoring alerts in production followed at 20:44 UTC. The support team flagged the outage at 21:14 UTC.

   Remediation

   • Reverted the node group deletion, which recreated the managed node groups
   • Manually scaled up one of the Live API node groups with more and much larger nodes and removed its taints
   • Removed node selectors from the applications one after another so their pods could be scheduled

   Action items

   • Treat Karpenter errors as high-urgency alerts that page the on-call engineer
   • Tune cluster alerting thresholds to send a high-urgency page earlier
   • Add alerts for nodes that stay NotReady or Unknown for long periods
   • Raise the thresholds of other deployment alerts, such as unschedulable pods and replicas not available
   • Give Karpenter its own IAM instance profile, separate from the one used by the node groups
   • Separate other AWS resources that were shared between uses, specifically IAM and security groups
   • Rework the EKS and Karpenter configuration so system instance profiles are unique, static per cluster and generated by Karpenter
   • Introduce a cloud visualization tool for engineers making infrastructure changes
   • Add live system and product metrics to the status page
   • Ask AWS to confirm the undocumented actions and side effects of deleting a node group
   • Correct the shared use of IAM roles and security groups across the infrastructure

   Lessons

   The IAM role for Karpenter's self-managed nodes should never have been the same as the one for the managed node groups; sharing it is what let the node group deletion break Karpenter, and the roles had been left combined for speed and simplicity when Karpenter was first set up. The hours-long delay between the configuration change and its effect made the incident hard to assess, and AWS confirmed that this delay is expected, so Stytch will allow for it in future IAM instance profile changes.

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5. IL-0513 PyPI backends on Kubernetes were unreachable over HTTPS for 20 minutes when the Ingress ELB lost its HTTPS listener

   Python Software Foundation2022

   Symptoms

   From 14:43 to 15:03 UTC on 24 October 2022, during regular maintenance of the Kubernetes cluster that hosts PyPI, PyPI's backends could not be reached over HTTPS. The CDN could not fetch pages, uploads to uploads.pypi.org were impossible, and other services such as the legacy file redirect service were interrupted.

   Service outage

   Trigger

   Regular maintenance did a rolling restart of every node in the cluster to roll out upgrades and new configuration; as the new Kubernetes API server hosts came up, Kubernetes validated and refreshed the Ingress configurations.

   Root cause

   Configuration change

   Component

   Ingress controllerCloud load balancer

   Contributing factor

   Configuration not in codeChange with a delayed effect

   Remediation

   • Pointed the Ingress configuration at the new ACM TLS certificate, and Kubernetes restored the HTTPS listener on the ELB

   Action items

   • Investigate managing the hostnames on the ACM TLS certificates for PyPI's Ingress through Kubernetes resources instead of the AWS console

   Lessons

   When every resource is managed through the Kubernetes API, drift between the desired state and reality is less likely to build up and then surface during later maintenance.

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