Cases18 cases

11 to 15 of 18

1. IL-0457 The HA HDFS NameNode of a log-collection Hadoop cluster failed over around 09:00 after its ZKFC health check timed out

   LINE2019

   Symptoms

   The NameNode of an HA HDFS cluster run by LINE Data Labs occasionally failed over at a particular time of day, around 09:00. At the failover the ZooKeeper Failover Controller (ZKFC) logged that its NameNode health check had timed out after 60 seconds: WARN ha.HealthMonitor (HealthMonitor.java:doHealthChecks(211)) - Transport-level exception trying to monitor health of NameNode at xxxx/xxx.xxx.xxx.xxx:xxxx: java.net.SocketTimeoutException: 60000 millis timeout while waiting for channel to be ready for read.

   Unnecessary failoverLock contention or deadlockIntermittent timeouts

   Trigger

   Around 09:00 the NameNode began deleting the files under the .Trash checkpoint (TrashPolicyDefault#deleteCheckpoint), and deleting one directory held the FSNamesystem write lock for about 36 seconds.

   Root cause

   Capacity exhaustion

   Component

   Shared network filesystemDatabase failover manager

   Contributing factor

   Unreviewed defaults

   Remediation

   • Changed fs.trash.interval from 4320 to 1440 so files under .Trash are deleted daily instead of every 3 days
   • Configured a dedicated Service RPC port for the ZKFC and DataNode health checks

   View case
2. IL-0210 GitHub's MySQL clusters failed over to the US West Coast and the site served slow, stale, inconsistent data for 24 hours

   GitHub2018

   Symptoms

   At 22:54 UTC on 21 October 2018 GitHub's internal monitoring started alerting on many faults at once. By 23:02 UTC the first responders saw that the replication topologies of many MySQL clusters were in an unexpected state: the Orchestrator API showed topologies made only of servers in the US West Coast data center. When connectivity came back, the application tier had immediately started sending writes to the new West Coast primaries.

   Split brainFailover failureReplication lagHigh latency

   Trigger

   At 22:52 UTC on 21 October, routine maintenance to replace failing 100G optical equipment cut connectivity between GitHub's US East Coast network hub and its primary US East Coast data center for 43 seconds.

   Root cause

   DNS or network fault

   Component

   DatabaseDatabase failover managerDatabase replicationDatabase backups and snapshotsNIC, cable and switch port link

   Contributing factor

   Automation amplificationUnverified assumption

   Detection

   GitHub's internal monitoring raised alerts on numerous faults at 22:54 UTC, two minutes after the partition. By 23:02 UTC the first responders had found, by querying the Orchestrator API, that many database clusters had a topology with only US West Coast servers.

   Remediation

   • Locked the internal deployment tooling to stop further changes
   • Paused webhook delivery and GitHub Pages builds to stop jobs writing metadata
   • Restored the affected MySQL clusters from backups into the US East Coast data center and let them replicate from the West Coast
   • Found ways to restore directly from the West Coast to get around the throughput limits of downloading from off-site storage
   • Moved all database primaries back to the US East Coast data center
   • Spread read traffic over additional MySQL read replicas in the US East Coast public cloud so replication could catch up
   • Failed over to the original topology once the replicas were in sync
   • Processed the backlog of webhook events and Pages builds, pausing to raise an internal TTL after about 200,000 webhook payloads were dropped

   Action items

   • Reconcile the writes from the captured MySQL binary logs that were not replicated, automatically where possible and with user outreach otherwise
   • Make sure status updates can be published even when GitHub Pages builds are paused
   • Give more accurate public estimates of the time to repair
   • Configure Orchestrator so it cannot promote database primaries across regional boundaries
   • Move to a status reporting mechanism that shows the status of each component of the platform
   • Serve GitHub traffic from multiple data centers in an active/active/active design with N+1 redundancy at the facility level
   • Test assumptions about the system more proactively
   • Validate failure scenarios systematically, with investment in fault injection and chaos engineering tooling

   Lessons

   Orchestrator did what it was configured to do, but the application tier could not work with primaries on the other side of the country: leader election within one region is generally safe, while the sudden cross-country latency was a major contributing factor. The behaviour emerged from a partition larger than any GitHub had seen. Replication caught up along a power decay curve, not a straight line, so the linear estimates of recovery time were wrong. GitHub concluded that tighter operational controls and faster response are not enough on their own and that failure scenarios have to be validated before they happen.

   View case
3. IL-0430 Mackerel's Redis stopped answering during a replication setup, keepalived failed over by mistake, and Mackerel degraded

   Hatena2018

   Symptoms

   On 26 September 2018 at 10:51 JST the whole Mackerel monitoring service stopped working properly and its alive monitoring stopped. The application servers could not connect to Redis, which stores Mackerel's monitoring data, and could not return correct responses.

   Monitoring outageHigh latencyIntermittent timeouts

   Trigger

   Redis memory use had been growing, so operators set up replication in order to scale Redis up. Building the replication took a long time and Redis stopped answering for a while, and keepalived treated this as a node failure and started a failover nobody intended.

   Root cause

   Configuration change

   Component

   In-memory cacheDatabase replicationDatabase failover manager

   Contributing factor

   Automation amplificationOverlapping failures

   Remediation

   • Switched back to the correct Redis and briefly saw the application return
   • Restarted the application servers one after another, which did not improve the symptoms
   • Detected the organizations posting inappropriate metrics and blocked their requests
   • Adjusted the timeout interval of the application servers
   • Temporarily added capacity to Diamond, the TSDB
   • Increased the number of Kinesis shards and Redis Cluster shards
   • Scaled out the API application servers
   • Put Mackerel in maintenance mode, checked it internally and let outside requests back gradually

   Action items

   • Raise the number of keepalived health checks for Redis so a brief load increase does not trigger a failover
   • Scale Redis up
   • Add more application servers
   • Change the application to store only the monitoring data it needs in Redis, reducing Redis memory use
   • Build a way to detect inappropriate API requests quickly and show them on a dashboard
   • Build a function to block organizations making inappropriate requests quickly
   • Keep improving the accuracy of detecting inappropriate requests and consider adding features such as an API limit
   • Strengthen monitoring of the application servers' internal processing so problems are handled before they become outages

   Lessons

   Hatena did not find why recovery took so long, but expects that keeping failover from reacting to short load spikes and giving the application more performance headroom would prevent an outage this long. It also aims to keep problems contained to a small part of the service when a failure does happen.

   View case
4. IL-0219 GoCardless's API and Dashboard failed every request for 1 hour 50 minutes when Pacemaker did not promote a replica

   GoCardless2017

   Symptoms

   At 15:09 BST on 10 October 2017, GoCardless's monitoring detected a total outage of its API and Dashboard: every request failed and returned an error. By 15:11 engineers saw evidence of a disk array failure on the primary Postgres node, but the Pacemaker cluster had not failed over to the synchronous replica as it should have.

   Service outageFailover failure

   Trigger

   The RAID controller of the primary Postgres node lost 3 disks of its array at once, so all reads and writes on the primary failed.

   Root cause

   Hardware failure

   Component

   DatabaseDatabase failover manager

   Contributing factor

   Overlapping failuresUnverified assumption

   Detection

   GoCardless's monitoring detected the total outage of the API and Dashboard at 15:09 BST, and engineers began investigating.

   Remediation

   • Powered off the broken primary Postgres node
   • Cleared the Pacemaker error counts with crm resource cleanup, which had no effect
   • Edited recovery.conf on the synchronous replica under maintenance mode several times, which Pacemaker reverted
   • Put the cluster into maintenance mode, configured the synchronous replica as primary and started Postgres by hand
   • Reconfigured the backend applications to connect to the new primary's actual IP address
   • Bootstrapped a third node as an asynchronous replica
   • Added a VIP managed by hand by the infrastructure team for manual failover
   • Verified data integrity and found no corruption
   • Migrated to a new Pacemaker-managed database cluster in a maintenance window and decommissioned the old one

   Action items

   • Express the Backup VIP rule as an INF preference for a replica instead of a -INF preference against the primary
   • Replace the VIPs with proxies on the application servers that route traffic by the state of the cluster
   • Run harsher fault injection tests of the Postgres cluster and consider automation that injects failures continually
   • Consider adding arbitrary restrictions to game day exercises, such as automation that has failed and a problem that cannot be diagnosed, so engineers practise bringing the service back another way

   Lessons

   A rule that two resources must not run together does not behave like the opposite of a rule that they must run together, and in some failure conditions the difference stopped Pacemaker from promoting a replica. A misconfiguration that shows only when two processes crash at almost the same time will not appear in basic tests or daily operations, only through fault injection. After two years in which the automation had handled every failure, the team's skill at controlling the cluster by hand had faded, and a runbook unused for years would likely have been out of date.

   View case
5. IL-0431 During Mackerel's move to AWS, PostgreSQL failed over to a replica that had stopped replicating, losing an hour of data

   Hatena2017

   Symptoms

   On 7 August 2017, while checking the application after the maintenance that moved Mackerel from an on-premises data center to AWS, the team found that data updated during a specific time window was missing. Everything written to the PostgreSQL database between 14:30 and 15:30 JST was gone.

   Data lossReplication lagNetwork unreachable

   Trigger

   One hour after the application was switched to the newly promoted primary db001, db001 lost network connectivity and the database failed over to the standby db002.

   Root cause

   Operator error

   Component

   DatabaseDatabase replicationDatabase failover manager

   Contributing factor

   Overlapping failuresUnreviewed defaultsUnrepresentative stagingAutomation amplification

   Detection

   The team found the missing data while checking how the application behaved after the migration work.

   Remediation

   • Tried to restore the lost updates by hand from the table data left on db001 and gave up
   • Tried point-in-time recovery from the base backup and WAL and gave up
   • Built a new replica db003 with db002 as primary to restore redundancy
   • Kept db001 in maintenance state for investigation
   • Watched db002 for some time to confirm the problem did not recur, then completed the migration

   Action items

   • Change the PostgreSQL replica creation script to set recovery_target_timeline = 'latest' in recovery.conf by default
   • Add a check to a server configuration test tool such as Serverspec that recovery.conf contains recovery_target_timeline = 'latest'

   Lessons

   A setting needed only for a rare layout, such as a grandchild replica during a migration, was applied by hand through a script option and was forgotten. Because recovery_target_timeline = 'latest' is harmless on ordinary standbys too, Hatena now sets it by default whenever a replica is created. The staging rehearsal used the same layout and steps but had the setting right, so it could not catch the mistake. Hatena notes that a similar layout may be used again for a future PostgreSQL upgrade or a move to another region.

   View case

By root cause9