Cases16 cases

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1. IL-0326 A retention clean-up job filled the disk of MailPace's managed Postgres, which stayed offline for just over two hours

   MailPace2023

   Symptoms

   At 13:36 BST on Friday August 11th 2023, minutes after MailPace reran its data clean-up job with more memory, notifications arrived that all database transactions were failing across multiple services. The managed Postgres database had gone offline, did not come back when restarted, and reported that it was out of space.

   Node disk fullService outageWrites rejected

   Trigger

   The daily retention clean-up job, which had been failing with killed, was rerun with its memory raised from 1gb to 8gb, and its large destroy_all deletions filled the database disk.

   Root cause

   Capacity exhaustion

   Component

   Database

   Contributing factor

   Inefficient queryMonitoring blind spotNo headroom

   Detection

   Notifications that all database transactions were failing across multiple services arrived as soon as the outage began; the provider was automatically notified at 99% storage. MailPace's two status pages did not detect the outage.

   Remediation

   • Contacted the managed database provider's support
   • Notified users on Twitter and Mastodon
   • Prepared an offsite backup from six hours earlier on a new database instance as a fallback
   • The provider migrated the database to a larger instance
   • Removed the old data in production by hand, day by day, with an updated query

   Action items

   • Delete old data in batches of 50 records with in_batches in the clean-up job
   • Run the clean-up job four times a day instead of once
   • Stay on a much larger database instance with room to grow
   • Add cron monitoring to all cron jobs
   • Point the status pages at a /health endpoint that checks database access and returns a 500 error on failure
   • Investigate a hot-replica database for automated failover

   Lessons

   Several causes came together: a clean-up job that failed silently, a naive deletion that grew huge once data had piled up, a database plan without headroom for growth, and status pages that missed the outage, presumably because https://app.mailpace.com still answered 200 while the database was down. MailPace also advises that critical services such as email sending be set up with more than one provider.

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2. IL-0311 BattleMetrics' primary PostgreSQL went read-only at transaction ID wraparound, breaking the website and RCON updates

   BattleMetrics2022

   Symptoms

   At 03:23 UTC on 27 March 2022, BattleMetrics' primary PostgreSQL database, which holds all account, server and player information, went into read-only mode. Users first saw the website fail to load, and soon RCON updates and queries began to fail as well.

   Writes rejectedService outage

   Trigger

   A corruption of the index on the player identifiers table, which BattleMetrics' logs place at about 26 February 2022, made every vacuum job fail, so transaction IDs kept climbing until Postgres stopped accepting writes on 27 March.

   Root cause

   Data loss or corruption

   Component

   DatabasePostgreSQL vacuumDatabase replicationDatabase backups and snapshots

   Contributing factor

   Monitoring blind spotOverlapping failuresNo headroom

   Detection

   Users failed to load the website and reported it as their API keys expired, then RCON updates and queries began to fail, and the team found that the main database no longer accepted writes.

   Remediation

   • Shut the database down and dropped the corrupted player identifiers index in single-user mode
   • Ran the vacuum again, which succeeded and let the database accept writes
   • Rebuilt the player identifier index, which took about two hours
   • Shut down the query workers and gave RCON updates priority
   • Pointed services at the new Postgres primary
   • Bootstrapped new replicas one after another to take load off the primary
   • Restarted queries with throttling, prioritised by server population and rank, after RCON updates had caught up

   Action items

   • Monitor errors in the Postgres logs
   • Monitor and alert on transaction IDs
   • Set up a logical replica in addition to physical replication
   • Build a faster network to speed up recovery from failure

   Lessons

   BattleMetrics names skipping health checks on transaction ID size as its critical mistake: the index corruption silently broke vacuum for a month, and without monitoring of transaction IDs nobody saw the database approach wraparound. Because the corruption had been replicated to the replicas, failing over did not help, and the backup servers and downloadable backups carried the same corruption. The team also found that, contrary to the error message, a full vacuum on a server in wraparound protection does not need single-user mode, and chose to run a slow, delayed service over no service while replicas were rebuilt.

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3. IL-0302 Peak load on GitHub's mysql1 MySQL cluster maxed out its database proxy's connections and stopped writes in March 2022

   GitHub2022

   Symptoms

   On March 16, 2022 at 14:09 UTC, write operations across GitHub stopped working, including git operations, webhooks, pull requests, API requests, issues, GitHub Packages, GitHub Codespaces, GitHub Actions and GitHub Pages. Under peak-hour load, the database proxy in front of the shared mysql1 MySQL database had reached its maximum number of connections.

   Writes rejectedDatabase overloadHigh error rateFailover failure

   Trigger

   Increased load on mysql1 during peak hours, combined with poor query performance in specific circumstances, pushed the database proxy to its maximum number of connections.

   Root cause

   Capacity exhaustion

   Component

   DatabaseDatabase proxy and connection pooler

   Contributing factor

   Inefficient queryChange during peak hoursHarmful manual actionExcessive blast radius

   Remediation

   • Failed over mysql1 to a healthy replica on March 16
   • Reset the application connections to the new primary on March 17
   • Added an index that fixed the main query performance problem
   • Performed a primary failover on March 22
   • Performed a primary failover on March 23
   • Throttled webhook traffic to reduce load

   Action items

   • Keep throttling webhook traffic at peak load times
   • Audit the load patterns of mysql1 during peak hours and make performance fixes based on the audits
   • Move traffic to other databases to reduce load and speed up failover
   • Review change management, particularly monitoring and changes during high load in production
   • Shard the databases and scale up hardware

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4. IL-0240 Cloudflare API requests failed and the dashboard slowed for hours after the authentication database lost its replicas

   Cloudflare2020

   Symptoms

   On 2 November 2020 the Cloudflare API and dashboard were degraded for six hours and 33 minutes. The success rate of API queries dropped at times to 75%, and the dashboard was up to 80 times slower than normal, while Cloudflare's edge network kept working.

   High error rateHigh latencyDatabase overloadWrites rejectedPacket loss

   Trigger

   At 14:43 UTC a network switch in a control plane data center partly failed: it kept LACP and BGP running but stopped forwarding some packets, and it recovered on its own six minutes later.

   Root cause

   DNS or network fault

   Component

   NIC, cable and switch port linkCoordination and key-value storeDatabase failover managerDatabaseDatabase replication

   Contributing factor

   Automation amplificationNo headroomHarmful manual action

   Detection

   At 14:43 UTC alerts fired because the misbehaving switch was unreachable to pings. Engineers then saw that the primary authentication database was overwhelmed.

   Remediation

   • Shed load from the primary authentication database by slowing SSL certificate pushes to the edge, emails and other features
   • Moved API traffic that could use read replicas to the secondary data center by hand
   • Sent authentication calls fully back to the primary data center when the dashboard got worse
   • Rebuilt the first database replica, which put itself back into service at 21:20 UTC and returned performance to normal
   • Ramped the turned-down services back up so asynchronous processing could catch up

   Action items

   • Remove the cluster management limitation that requires rebuilding all replicas after a primary is promoted
   • Redesign the user sessions system so dashboard traffic can be steered between data centers
   • Change the auto-remediation configuration so a database replica is not promoted so quickly
   • Tune each system involved to be more resilient to failures of its dependencies

   Lessons

   Every system in the chain had redundancy and none failed completely; each only degraded, which made the chain of events much harder to model and foresee. Automating replica promotion so that it could trigger on a minute's notice had been a point of pride, but for at least one database a fast promotion can do more harm than the failure it answers. Most general-purpose cluster managers use Raft or Paxos rather than Byzantine fault tolerant protocols, accepting a rare failure mode in exchange for a protocol that is simpler to implement correctly and debug.

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5. IL-0323 A RAID battery backup unit failure crashed db1075, the MariaDB primary of section s3, and every s3 wiki went read-only

   Wikimedia Foundation2019

   Symptoms

   At 18:40 UTC db1075, the primary database of section s3, stopped answering, and all s3 wikis went read-only because no writes could reach it. Reads kept working from the replicas. At 18:42:45 Icinga reported "PROBLEM - Host db1075 is DOWN: PING CRITICAL - Packet loss = 100%".

   Writes rejectedReplication lagHigh latency

   Trigger

   The RAID battery backup unit (BBU) of db1075, the s3 primary database host, failed and the whole host crashed.

   Root cause

   Hardware failure

   Component

   DatabaseDatabase replication

   Contributing factor

   Pages not deliveredHarmful manual action

   Detection

   Icinga reported db1075 HOST DOWN on IRC at 18:42:45, but that alert does not page; replica Slave IO alerts followed, users reported problems on #wikimedia-operations, and the first SMS page went out at 18:56. Volunteers and staff noticed the failure before the alerts did.

   Remediation

   • Power-cycled db1075 from the iDRAC after finding the BBU problem
   • Let MySQL finish InnoDB recovery on db1075
   • Removed read_only=ON from db1075 by hand
   • Ran puppet by hand a second time so pt-heartbeat started

   Action items

   • Implement or refactor a script that moves replicas when the primary is unavailable
   • Fix the MediaWiki heartbeat model so pt-heartbeat does not use a super-user, avoids a single point of failure and follows the real primary without depending on puppet
   • Decide what to do with the batch of hosts that already had BBU issues
   • Buy a new BBU for db1075
   • Remove db1075 from the primary role
   • Address MediaWiki spam while the database is read-only or the primary is unavailable
   • Make primary database hosts page on HOST DOWN
   • Track hardware errors better in Netbox

   Lessons

   A BBU failure should not crash a whole host, yet it had happened before on HP hosts. HOST DOWN on a primary database should page instead of only alerting on IRC. Starting pt-heartbeat through puppet races with MySQL startup, and the unnoticed failure kept lag reported and made the outage 8 minutes longer.

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