Cases4 cases

1 to 4 of 4

1. IL-0208 A GitLab chart bump that renamed Kubernetes Service and Deployment ports made the GCP load balancer reconfigure, and GitLab.com slowed down and returned intermittent 50x errors

   GitLab2022

   Symptoms

   At 07:53 UTC on 2022-03-31 the rate of 50x errors on GitLab.com went up, and at 07:54 PagerDuty paged the engineer on call (EOC) about the rising error rate. Users saw slow pages and intermittent 50x error pages. The incident lists the Web, API, Git and Pages services as affected.

   High error rateHigh latencyIntermittent timeouts

   Trigger

   A k8s-workloads/gitlab-com pipeline deployed merge request !1643, a GitLab chart bump that changed the port names of Kubernetes Services and Deployments (related to the Prometheus service and pod monitors), starting with the canary environment gprd-cny at 07:49 UTC.

   Root cause

   Configuration change

   Component

   HelmCloud load balancerHAProxy

   Contributing factor

   Automation amplification

   Detection

   A PagerDuty alert on the rising error rate paged the EOC at 07:54 UTC, one minute after the 50x errors went up. The engineer deploying the change noticed the errors and linked them to it.

   Remediation

   • drained the canary environment and re-enabled it after twenty minutes
   • cancelled the deployment jobs for clusters c and d before they started
   • drained gprd-us-east1-d in HAProxy and re-enabled it five minutes later
   • raised the minimum replica count above 100 (merge request !1650)
   • drained gprd-us-east1-c in HAProxy, deployed the change to it, and re-enabled it
   • reverted the minimum replica increase (merge request !1652)

   Action items

   • Implement graceful draining of a whole regional cluster
   • Create a Chatops command that puts PagerDuty into maintenance mode

   Lessons

   Renaming ports on Kubernetes Services and Deployments behind a GCP load balancer made the load balancer reconfigure, and requests were slow or timed out until the new configuration had fully applied, which took minutes. GitLab notes that alerting worked well. The follow-up work is a way to drain a whole regional cluster gracefully and a Chatops command to put PagerDuty into maintenance mode.

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2. IL-0197 Moving a three-node Elasticsearch StatefulSet to new persistent volumes split the cluster in two, because the Helm chart hardcoded cluster.initial_master_nodes to elasticsearch-0

   Palark2021

   Symptoms

   After the last old Elasticsearch pod, elasticsearch-0, was deleted and came back on a new, empty persistent volume, `_cat/nodes` run inside that pod listed a single node: elasticsearch-0 itself, marked as master. The same command run inside elasticsearch-1 listed the other five nodes, elasticsearch-1 to elasticsearch-5, with elasticsearch-2 as master.

   Split brain

   Trigger

   Deleting the elasticsearch-0 pod and its PVC so that it restarted on an empty volume of the new StorageClass.

   Root cause

   Operator error

   Component

   Elasticsearch or OpenSearchPersistent volumes and stateful setsHelm

   Contributing factor

   Unverified assumption

   Detection

   The engineer running the migration checked `_cat/nodes` after elasticsearch-0 restarted and saw it alone in a cluster of its own.

   Remediation

   • scaled the three deployments of workers writing to Elasticsearch down to zero
   • listed elasticsearch-0, elasticsearch-1 and elasticsearch-2 under initial_master_nodes in the elasticsearch ConfigMap and removed the cluster.initial_master_nodes environment variable from the StatefulSet
   • saved and deleted the elasticsearch discovery Service and deleted the PVC of elasticsearch-0 while the rolling update ran
   • set initial_master_nodes to elasticsearch-3, elasticsearch-4 and elasticsearch-5, created an empty PVC for elasticsearch-0 and deleted all six pods
   • recreated the discovery Service from the saved manifest, after which the six nodes formed one cluster with every index green

   Action items

   • Restore the original initial_master_nodes values in the ConfigMap and restart all pods again
   • Move all shards to nodes 0, 1 and 2 and scale the cluster down from six nodes to three
   • Commit all the manual changes to the repository

   Lessons

   A setting that only matters when a cluster first starts, such as Elasticsearch's cluster.initial_master_nodes, can sit in a Helm chart template rather than in the ConfigMap that was reviewed. When a pod named in it starts with an empty data directory, it can bootstrap a new cluster beside the existing one. The author's conclusion is that a migration plan like this one breaks on any surprise and needs a plan B ready. Before running it in a more important environment, rehearse it in a test environment configured like production, and either schedule downtime or move the load to another cluster: stop the writers, take a fresh backup, then move the data.

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3. IL-0172 An AWS Tokyo data centre cooling failure took down 6 of 60 CockroachDB nodes on Kubernetes within 22 minutes, and ranges lost quorum because the Helm-deployed cluster had no availability zone locality configured

   Devsisters2021

   Symptoms

   During a team dinner, a Slack alert reported that one node of the CockroachDB cluster behind Cookie Run: Kingdom had gone down. The DevOps engineers were not worried at first, because CockroachDB is built to survive the loss of some nodes.

   Node NotReadyData lossService outage

   Trigger

   A cooling system failure in an AWS Tokyo region data centre overheated the servers in one availability zone, which held CockroachDB nodes.

   Root cause

   Cloud provider outage

   Component

   Application databaseHelm

   Contributing factor

   Unverified assumptionExcessive blast radius

   Detection

   A Slack alert reported that a database node had gone down.

   Remediation

   • copied the data outside the broken ranges into new tables with INSERT INTO ... SELECT queries that skipped the affected ranges
   • ran debug unsafe-remove-dead-replicas together with Cockroach Labs engineers, recovering one of the two lost data ranges
   • restored the last data range with the storage-layer recovery method from the previous incident

   Action items

   • Configure CockroachDB Locality so data is spread evenly across availability zones
   • Deploy with one chart and a separate values file per availability zone to set Locality
   • Replace nodes by adding Locality-configured nodes, confirming replicas in every zone, then retiring the old nodes

   Lessons

   A replication factor sized for random instance retirements does not protect against a whole availability zone failing; for a game of this scale a multi-AZ placement is required, not optional. Keeping one uniform Helm chart made zone topology hard to set, which is part of why it was left out. A repetitive chart with a values file per zone sets it reliably.

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4. IL-0040 Parallel Helm installs saturated small gp2 root volumes on a kops cluster and left all three workers NotReady with the kubelet or Docker down

   Saltside2017

   Symptoms

   While running the CI process on a local machine to test an application Helm chart, the SRE lead watched the pods with watch kubectl get pods. All pods reached Running, and then some went back to Pending. Two hours later the problem had grown and some pods showed the phase Unknown.

   Pods PendingImage pull failuresNode NotReadyService outage

   Trigger

   A CI run installed the application's Helm charts for all four markets (Efritin.com, Tonaton.com, Ikman.lk and Bikroy.com) on the nonproduction cluster at the same time.

   Root cause

   Capacity exhaustion

   Component

   Node root diskkubeletContainer runtimeHelm

   Contributing factor

   Unreviewed defaultsMonitoring blind spotIgnored early signalSingle point of failure

   Detection

   The SRE lead saw pods go from Running back to Pending while watching kubectl get pods during the CI run; no monitoring raised an alert, even when all three workers were not ready.

   Remediation

   • terminated the three worker nodes and let the auto scaling group replace them

   Action items

   • Fix the Datadog integration for the nonproduction AWS account and repeat the installs with telemetry
   • Increase the worker root EBS volumes from 20GB to 120GB
   • Keep common base images pulled on every node with a DaemonSet until kops supports user hooks
   • Configure different allocation limits for the different layers in Kubernetes
   • Discuss a highly available Tiller with the Helm team
   • Find a way to throttle the number of newly created pods

   Lessons

   An ordinary deploy of the application could collapse the cluster, because the default 20GB gp2 root volumes could not keep up with parallel image pulls and container starts. Without node metrics and pod phase metrics, three NotReady workers raised no alert. A single Tiller replica can block the deploy that would fix an outage.

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