IL-0436 freee · 2025-08-27 (published)databaseaws
A supremum lock left by ROLLBACK TO SAVEPOINT in a long transaction blocked inserts and filled Aurora MySQL connections
In MySQL's default REPEATABLE READ isolation, InnoDB takes gap locks between records as well as record locks. An INSERT first takes an insert intention lock on the gap it inserts into, which conflicts only with other gap locks; with an auto-increment primary key that gap on the primary index is the supremum, the virtual upper bound after the last record. A long transaction held an exclusive lock on the supremum for a long time, so every INSERT into the table waited, many threads piled up waiting for the lock to be released, the connections ran out and the service stopped.
The long transaction's only locking statement on that table was an INSERT; otherwise it ran SELECT and UPDATE on other tables and SAVEPOINT and ROLLBACK TO SAVEPOINT. freee's DBRE team reproduced the lock with the sequence begin, any read, SAVEPOINT, INSERT into the table, ROLLBACK TO SAVEPOINT: performance_schema.data_locks showed only a TABLE IX lock after the INSERT, and a RECORD X lock on the "supremum pseudo-record" after the rollback. After an INSERT the transaction holds an implicit exclusive lock on the new record, not shown in data_locks until a conflict occurs. When the rollback's undo removes the record, the lock is not released but is inherited by the next gap, which for a record at the end of the index is the supremum. The MySQL 8.0 code calls this inheritance explicitly through row_undo_ins_remove_clust_rec() -> btr_cur_pessimistic_delete() -> lock_update_delete() -> lock_rec_inherit_to_gap().
Rollback to a savepoint was being used inside freee without developers knowing it: Rails Active Record uses SAVEPOINT when ActiveRecord::Base.transaction is given requires_new: true, and #create_or_find_by and #find_or_create_by call ActiveRecord::Base.transaction(requires_new: true) internally. The supremum lock alone causes no trouble; together with a long transaction it took the whole web service down.
- Severity
- –
- Scope
- A whole freee web service was down: its web pages could not be opened
- Users affected
- –
- Region
- –
- Time to detect
- –
- Time to resolve
- –
Symptoms
Connections to Aurora MySQL failed again and again in one freee service until its web pages could not be opened at all. The database did not respond, the web application timed out and could not open new database connections, and the whole service was down.
On the Aurora MySQL writer instance, CPUUtilization and FreeableMemory showed nothing abnormal and the instance was not under heavy load. BlockedTransactions, the number of transactions waiting on locks, rose sharply, and DatabaseConnections rose sharply until it reached its limit.
Database Insights showed that around the time of the failure INSERTs into one table were waiting on wait/synch/cond/innodb/row_lock_wait, so new rows could not be added to it. This looked odd, because the table's primary key is an AUTO_INCREMENT value and an INSERT of a new row would not normally be blocked by a gap lock. The SHOW ENGINE INNODB STATUS output showed a long transaction holding lock_mode X on the PRIMARY index record "asc supremum;;".
Root cause
Root cause Software defect
- Trigger
- A long transaction inserted a row into the table after a SAVEPOINT and then ran ROLLBACK TO SAVEPOINT, which left it holding an exclusive lock on the supremum of the table's primary index.
Detection
–
Remediation
–
Action items
- As a rule stop issuing SAVEPOINT, split a transaction when a partial rollback is needed, and set an application-side timeout where a nested transaction is unavoidable
- Teach developers to consider READ COMMITTED per session for use cases that can accept phantom rows
- Monitor long transactions and keep working to remove them across the company
Lessons
ROLLBACK TO SAVEPOINT rolls back rows but does not release their locks, so rolling back one inserted row can leave a supremum lock that blocks every INSERT into the table. ORM frameworks, including Active Record for nested transactions, use SAVEPOINT internally without developers noticing. Locks held by long transactions often go unnoticed when few workloads are blocked, and this incident showed their hidden risk.
Sources
Related cases
IL-0451Setting indexes INVISIBLE on Aurora MySQL 3.10 spiked CPU and ReadIOPS on all three readers but not on the writerDaangn · 2026same root cause · shared Database
IL-0313Decagon voice requests stalled for exactly 300 seconds behind self-managed PgBouncer and exhausted the SQLAlchemy poolDecagon · 2026same root cause · shared Database
IL-0281PostHog's Logs ClickHouse cluster silently deleted almost all its S3 data, losing US logs older than 3 daysPostHog · 2026same root cause · shared Database
IL-0310An Aurora PostgreSQL failover to an upsized reader reversed twice and backend writes failed in read-only transactionsHightouch · 2025same root cause · shared Database
IL-0150A latent race condition in DynamoDB's DNS automation left an empty DNS record for dynamodb.us-east-1.amazonaws.com, and the DynamoDB and EC2 launch failures that followed caused EKS, ECS and Fargate container launch failures and cluster scaling delays in us-east-1Amazon Web Services · 2025same root cause · shared Database
IL-0527OpenStreetMap.org made no replication diffs for 16 hours as PostgreSQL logical decoding failed on a memory alloc errorOpenStreetMap Foundation · 2025same root cause · shared Database
IL-0329A routine migration left PGAudit stuck holding Postgres locks, causing intermittent timeouts and a 2-minute outageincident.io · 2025same root cause · shared Database
IL-0347About 25% of Scaleway FR-PAR-1 hypervisors lost VPC connectivity when both VPC BGP route reflectors got stuckScaleway · 2024same root cause · shared Database
IL-0373Heroku Postgres Essential-tier databases in the EU region ran out of memory and refused connections, twice in four daysHeroku · 2024same root cause · shared Database
IL-0024Expensive cache-backed API calls and uncancelled database requests overloaded MongoDB and took the Hugging Face Hub down three timesHugging Face · 2024same root cause · shared Database
IL-0217Honeycomb's main MySQL database locked up under cache-miss reads and ran out of connections, a 68-minute total outageHoneycomb · 2023same root cause · shared Database
IL-0330Requests timed out for two weeks waiting on Go's database/sql connection pool, one for almost 20 secondsincident.io · 2023same root cause · shared Database
IL-0385GitHub MySQL read replicas hit a semaphore deadlock during a schema migration's table rename and kept crash-recoveringGitHub · 2021same root cause · shared Database
IL-0462Some MySQL pods on Shopify's GKE clusters took up to 30 minutes to start, slowing instance replacementShopify · 2021same root cause · shared Database
IL-0196Adding a second Redis replica and lowering memory limits in one RedisFailover change restarted the only Redis pod that held data, and Sentinel promoted the empty new replica, erasing the dataPalark · 2020same root cause · shared Database
IL-0486Figma's PostgreSQL 9 database on RDS slowed under high write IOPS and lock contention until the site was unavailableFigma · 2020same root cause · shared Database
IL-0241A database shard could not elect a new primary, and the Stripe API failed most requests in two periods on one dayStripe · 2019same root cause · shared Database
IL-0439Database access slowed after each block device and filesystem expansion because the Linux kernel dropped the page cacheCybozu · 2018same root cause · shared Database
IL-0388A Google Cloud live migration took a Discord Redis primary offline, and the failover broke API instances and then guildsDiscord · 2017same root cause · shared Database
IL-0454Baemin billing servers could not open new MariaDB connections at the start of a card-discount eventWoowa Brothers · 2016same root cause · shared Database
IL-0536Amazon SimpleDB in US East returned HTTP 500 to nearly all API calls for two hours after its nodes left the clusterAmazon Web Services · 2014same root cause · shared Database
IL-0485Dropbox went down when an OS upgrade script reinstalled active MySQL master-replica pairs and backup restores ran slowDropbox · 2014same root cause · shared Database
IL-0589Every Kickstarter MySQL replica on Amazon RDS stopped replicating on a duplicate-key error in the backings tableKickstarter · 2013same root cause · shared Database
IL-0303GitHub's MySQL master failed over to a node with a cold buffer pool during a schema migration and GitHub.com went downGitHub · 2012same root cause · shared Database
Check your cluster for this
For AI tools and scripts
- This case as JSON: https://incidentlib-api.benchlet.com/cases/IL-0436
- The cases most like it: https://incidentlib-api.benchlet.com/cases/IL-0436/similar
- MCP server (Streamable HTTP, no key):
https://incidentlib-mcp.benchlet.com/mcp
The API needs no key. The MCP server offers search_incidents, get_incident, list_incidents, get_topic and vocab; both are explained on API and MCP.